Pajaroellobacter abortibovis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Pajaroellobacter

Average proteome isoelectric point is 6.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1745 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L6MXN8|A0A1L6MXN8_9DELT Uncharacterized protein OS=Pajaroellobacter abortibovis OX=1882918 GN=BCY86_05790 PE=4 SV=1
MM1 pKa = 7.79CSLPPPSVDD10 pKa = 5.39DD11 pKa = 3.61VDD13 pKa = 5.2GDD15 pKa = 4.12PEE17 pKa = 4.49SCLGSCPALMSAPEE31 pKa = 4.37GVHH34 pKa = 6.23FPVITSWQEE43 pKa = 3.64GLGDD47 pKa = 4.07CVAIQNQMAVFNAMTGSGATRR68 pKa = 11.84QNRR71 pKa = 11.84LKK73 pKa = 11.1EE74 pKa = 3.79EE75 pKa = 4.21DD76 pKa = 3.27

Molecular weight: 8.01 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L6MWT1|A0A1L6MWT1_9DELT Uncharacterized protein OS=Pajaroellobacter abortibovis OX=1882918 GN=BCY86_04405 PE=4 SV=1
MM1 pKa = 7.56RR2 pKa = 11.84LWIKK6 pKa = 9.19FEE8 pKa = 3.95RR9 pKa = 11.84VIRR12 pKa = 11.84KK13 pKa = 9.35AIYY16 pKa = 9.54PEE18 pKa = 3.87AANLVRR24 pKa = 11.84QCIRR28 pKa = 11.84RR29 pKa = 11.84GHH31 pKa = 4.85QVVFAWGAFDD41 pKa = 5.04FVVKK45 pKa = 10.61RR46 pKa = 11.84LAAYY50 pKa = 9.52LKK52 pKa = 9.64TAMITNRR59 pKa = 11.84LEE61 pKa = 3.94VRR63 pKa = 11.84EE64 pKa = 4.25KK65 pKa = 10.33YY66 pKa = 9.3ATGKK70 pKa = 9.96LVRR73 pKa = 11.84PIVAGLEE80 pKa = 3.89KK81 pKa = 10.7ARR83 pKa = 11.84LIRR86 pKa = 11.84AYY88 pKa = 10.23AQACEE93 pKa = 4.81HH94 pKa = 6.36SLEE97 pKa = 4.43DD98 pKa = 4.81CIATSIHH105 pKa = 6.47RR106 pKa = 11.84RR107 pKa = 11.84MGLQKK112 pKa = 10.54SVIWRR117 pKa = 11.84EE118 pKa = 3.69TSFFCLLASSPFQSRR133 pKa = 11.84CGRR136 pKa = 11.84PP137 pKa = 3.01

Molecular weight: 15.86 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1745

0

1745

497364

49

1783

285.0

31.73

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.353 ± 0.06

1.378 ± 0.023

4.261 ± 0.039

6.508 ± 0.064

4.259 ± 0.041

7.229 ± 0.062

2.719 ± 0.031

6.179 ± 0.051

4.603 ± 0.051

10.996 ± 0.07

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.239 ± 0.028

2.736 ± 0.032

5.161 ± 0.051

4.369 ± 0.033

6.311 ± 0.056

6.989 ± 0.053

4.965 ± 0.036

6.76 ± 0.05

1.398 ± 0.026

2.586 ± 0.036
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski