Sweet potato C6 virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus

Average proteome isoelectric point is 6.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|J7GQ22|J7GQ22_9VIRU 7 kDa protein OS=Sweet potato C6 virus OX=1307958 PE=3 SV=1
MM1 pKa = 7.72DD2 pKa = 5.14VIVKK6 pKa = 10.18KK7 pKa = 10.55LRR9 pKa = 11.84SRR11 pKa = 11.84GFTFNKK17 pKa = 9.5PIEE20 pKa = 4.37GSFLVVNCVPGAGKK34 pKa = 10.39SSLIRR39 pKa = 11.84EE40 pKa = 4.71LIEE43 pKa = 3.84EE44 pKa = 4.3DD45 pKa = 3.49SRR47 pKa = 11.84FEE49 pKa = 4.17AFTFGHH55 pKa = 6.8PDD57 pKa = 3.12KK58 pKa = 11.22PNVTNCFIKK67 pKa = 10.72SSDD70 pKa = 3.96EE71 pKa = 3.51IRR73 pKa = 11.84SRR75 pKa = 11.84QFAIVDD81 pKa = 4.02EE82 pKa = 4.36YY83 pKa = 11.55TEE85 pKa = 4.23GDD87 pKa = 3.55FRR89 pKa = 11.84KK90 pKa = 9.48FDD92 pKa = 4.93PIAIFGDD99 pKa = 4.08PCQSTAFKK107 pKa = 10.48EE108 pKa = 4.01PNLICNYY115 pKa = 9.69FSTRR119 pKa = 11.84TFRR122 pKa = 11.84FGKK125 pKa = 8.62ATAALLRR132 pKa = 11.84SLGFNIWADD141 pKa = 3.47KK142 pKa = 10.73EE143 pKa = 4.29DD144 pKa = 3.85TVEE147 pKa = 3.77IGHH150 pKa = 5.99IFEE153 pKa = 5.38RR154 pKa = 11.84EE155 pKa = 3.76PEE157 pKa = 4.23GQIVCYY163 pKa = 9.86EE164 pKa = 4.04PEE166 pKa = 3.67IQRR169 pKa = 11.84LVEE172 pKa = 4.02RR173 pKa = 11.84HH174 pKa = 5.98SGFALTVEE182 pKa = 5.27DD183 pKa = 3.69IRR185 pKa = 11.84GITEE189 pKa = 4.04DD190 pKa = 3.56VVTFITSEE198 pKa = 4.05TKK200 pKa = 10.33FDD202 pKa = 3.97NKK204 pKa = 10.12HH205 pKa = 5.37SALIYY210 pKa = 10.32LCLTRR215 pKa = 11.84HH216 pKa = 5.01MSKK219 pKa = 10.82LLILTPDD226 pKa = 3.33GSYY229 pKa = 10.6TSSS232 pKa = 2.95

Molecular weight: 26.36 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|J7GU58|J7GU58_9VIRU Movement protein TGB2 OS=Sweet potato C6 virus OX=1307958 PE=3 SV=1
MM1 pKa = 7.74ALTPPPDD8 pKa = 3.34HH9 pKa = 7.12SKK11 pKa = 11.08SLLAICVGIAIALVLYY27 pKa = 10.78SLTRR31 pKa = 11.84SNLPHH36 pKa = 7.58VGDD39 pKa = 4.21NLHH42 pKa = 6.4SLPHH46 pKa = 6.2GGCYY50 pKa = 9.21QDD52 pKa = 3.43GTKK55 pKa = 10.35SISYY59 pKa = 9.36NSPARR64 pKa = 11.84TYY66 pKa = 9.92PASTLLAKK74 pKa = 10.39SAFNPFLIVLLLSACIFILSKK95 pKa = 10.75NQSHH99 pKa = 6.15SCRR102 pKa = 11.84SCRR105 pKa = 11.84GYY107 pKa = 10.99CC108 pKa = 3.95

Molecular weight: 11.59 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

2724

78

2001

544.8

61.72

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.874 ± 0.987

2.019 ± 0.706

5.91 ± 0.53

6.241 ± 0.727

6.424 ± 0.921

5.103 ± 0.428

2.239 ± 0.286

6.131 ± 0.622

7.416 ± 0.949

11.087 ± 1.865

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.762 ± 0.269

5.029 ± 0.495

3.965 ± 0.387

3.084 ± 0.445

5.029 ± 0.432

9.398 ± 0.659

4.626 ± 0.659

4.919 ± 0.346

0.954 ± 0.312

2.753 ± 0.41
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski