Penguin siadenovirus A

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Siadenovirus

Average proteome isoelectric point is 6.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 22 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A162HSM3|A0A162HSM3_9ADEN ORF8 OS=Penguin siadenovirus A OX=2005055 GN=CSPAdV-2_gp22 PE=4 SV=1
MM1 pKa = 7.92DD2 pKa = 5.45SEE4 pKa = 5.59DD5 pKa = 3.91EE6 pKa = 4.34LEE8 pKa = 4.69GPVMLPPLQVHH19 pKa = 7.12RR20 pKa = 11.84ISSTNRR26 pKa = 11.84FTSGTVLDD34 pKa = 4.89LPSMTDD40 pKa = 2.57NCFVYY45 pKa = 10.54NFKK48 pKa = 10.22TPTGEE53 pKa = 4.16TVFIEE58 pKa = 4.58SNGQFKK64 pKa = 10.45FSEE67 pKa = 4.65YY68 pKa = 11.06NFGTLFSGFNDD79 pKa = 3.24VTLEE83 pKa = 3.93MQLDD87 pKa = 3.62FHH89 pKa = 8.11YY90 pKa = 10.55MFDD93 pKa = 4.64CMLDD97 pKa = 3.9FKK99 pKa = 10.68WPNADD104 pKa = 3.76LEE106 pKa = 4.53YY107 pKa = 10.91SVNVYY112 pKa = 7.73TDD114 pKa = 3.21RR115 pKa = 11.84RR116 pKa = 11.84IAIYY120 pKa = 10.4DD121 pKa = 4.17LSNADD126 pKa = 3.56YY127 pKa = 10.24WPTILAWFAWQCNSNGINFFQYY149 pKa = 10.43VRR151 pKa = 11.84LLNEE155 pKa = 4.68DD156 pKa = 5.24DD157 pKa = 4.07EE158 pKa = 4.88GCPYY162 pKa = 9.94GTIFAA167 pKa = 5.2

Molecular weight: 19.41 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A162HSI2|A0A162HSI2_9ADEN Core protein pX OS=Penguin siadenovirus A OX=2005055 GN=CSPAdV-2_gp09 PE=4 SV=1
MM1 pKa = 7.22TSIVYY6 pKa = 10.4SPADD10 pKa = 3.3SRR12 pKa = 11.84GWGFGNSSMRR22 pKa = 11.84DD23 pKa = 3.45YY24 pKa = 11.51YY25 pKa = 11.25LIGGALEE32 pKa = 4.36PSDD35 pKa = 3.52IYY37 pKa = 9.13TVRR40 pKa = 11.84VRR42 pKa = 11.84EE43 pKa = 3.76HH44 pKa = 5.23WRR46 pKa = 11.84RR47 pKa = 11.84KK48 pKa = 6.71QRR50 pKa = 11.84RR51 pKa = 11.84KK52 pKa = 9.88SAAVQATPVVVAPVRR67 pKa = 11.84RR68 pKa = 11.84PRR70 pKa = 11.84RR71 pKa = 11.84RR72 pKa = 11.84RR73 pKa = 11.84AVGVQVPSTRR83 pKa = 11.84VLRR86 pKa = 11.84SATRR90 pKa = 11.84RR91 pKa = 11.84LAPVVPALPAPAVVPALPAPVAPVAAAIPTVSAPVKK127 pKa = 9.93RR128 pKa = 11.84RR129 pKa = 11.84RR130 pKa = 11.84IGG132 pKa = 3.09

Molecular weight: 14.36 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

22

0

22

7646

57

1108

347.5

39.63

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.428 ± 0.381

2.106 ± 0.453

5.31 ± 0.261

5.467 ± 0.373

5.166 ± 0.217

4.551 ± 0.446

2.04 ± 0.255

6.762 ± 0.4

5.82 ± 0.693

9.639 ± 0.602

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.354 ± 0.184

6.539 ± 0.325

5.323 ± 0.319

4.578 ± 0.279

4.8 ± 0.481

7.219 ± 0.289

6.474 ± 0.439

5.31 ± 0.364

1.02 ± 0.099

4.094 ± 0.299
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski