Colletotrichum tofieldiae

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; sordariomyceta; Sordariomycetes; Hypocreomycetidae; Glomerellales; Glomerellaceae; Colletotrichum; Colletotrichum spaethianum species complex

Average proteome isoelectric point is 6.48

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 12499 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A166TFK7|A0A166TFK7_9PEZI Uncharacterized protein OS=Colletotrichum tofieldiae OX=708197 GN=CT0861_03357 PE=4 SV=1
MM1 pKa = 7.56HH2 pKa = 7.5LTTIAALSLFTQLASAQTVVTITEE26 pKa = 4.62GPPSPTAEE34 pKa = 4.4PEE36 pKa = 3.94WTSDD40 pKa = 3.49DD41 pKa = 3.92TFTSAVLNSTNFYY54 pKa = 10.46RR55 pKa = 11.84NEE57 pKa = 3.95HH58 pKa = 5.92NASDD62 pKa = 4.07VTWNDD67 pKa = 2.99TLADD71 pKa = 3.95FAIDD75 pKa = 3.84YY76 pKa = 10.3LDD78 pKa = 4.88DD79 pKa = 3.85MSGDD83 pKa = 3.64SCDD86 pKa = 4.21FEE88 pKa = 5.93HH89 pKa = 7.41SGGPYY94 pKa = 10.49GEE96 pKa = 4.61NLAKK100 pKa = 10.54GYY102 pKa = 9.83PNTTLSIEE110 pKa = 3.93AWGDD114 pKa = 3.18EE115 pKa = 3.9RR116 pKa = 11.84DD117 pKa = 5.24DD118 pKa = 4.04YY119 pKa = 12.06DD120 pKa = 3.85FDD122 pKa = 4.63KK123 pKa = 11.85GEE125 pKa = 3.96FDD127 pKa = 4.03EE128 pKa = 4.76DD129 pKa = 3.7TGHH132 pKa = 6.34FTQLVWKK139 pKa = 8.35NTTDD143 pKa = 3.36VGCGRR148 pKa = 11.84KK149 pKa = 9.52LCGDD153 pKa = 3.78GQWYY157 pKa = 8.47LVCEE161 pKa = 3.83YY162 pKa = 9.57WPRR165 pKa = 11.84GNVVGQFVEE174 pKa = 4.73QVQEE178 pKa = 3.92EE179 pKa = 4.35ALGARR184 pKa = 11.84TAPGMLLGIVVMASFWTLSS203 pKa = 3.2

Molecular weight: 22.42 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A161VNC6|A0A161VNC6_9PEZI Cwf15/Cwc15 cell cycle control protein (Fragment) OS=Colletotrichum tofieldiae OX=708197 GN=CT0861_06313 PE=3 SV=1
LL1 pKa = 8.17LEE3 pKa = 5.0ARR5 pKa = 11.84TTTPPLRR12 pKa = 11.84LTSPSKK18 pKa = 10.64RR19 pKa = 11.84SLAVSWTSSTAWPVVVARR37 pKa = 11.84ARR39 pKa = 11.84SGRR42 pKa = 11.84TVLIRR47 pKa = 11.84PSTSSKK53 pKa = 10.54KK54 pKa = 10.14SFSAKK59 pKa = 9.0VLRR62 pKa = 11.84TTKK65 pKa = 10.55APPSKK70 pKa = 10.17RR71 pKa = 11.84KK72 pKa = 8.84MNRR75 pKa = 11.84FPILSGASTRR85 pKa = 11.84TPPARR90 pKa = 11.84RR91 pKa = 11.84FPSRR95 pKa = 11.84IRR97 pKa = 11.84TRR99 pKa = 11.84SLVSKK104 pKa = 10.51CLLAPSTTHH113 pKa = 7.19RR114 pKa = 11.84AASPPTIRR122 pKa = 11.84LHH124 pKa = 7.21DD125 pKa = 3.95RR126 pKa = 11.84STT128 pKa = 3.14

Molecular weight: 14.07 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

12499

0

12499

6353999

25

11475

508.4

56.05

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.119 ± 0.021

1.235 ± 0.009

5.673 ± 0.014

5.988 ± 0.024

3.76 ± 0.013

7.124 ± 0.02

2.344 ± 0.01

4.725 ± 0.015

4.764 ± 0.022

8.778 ± 0.021

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.169 ± 0.009

3.654 ± 0.012

6.129 ± 0.022

3.91 ± 0.017

6.016 ± 0.02

7.99 ± 0.025

6.041 ± 0.029

6.332 ± 0.017

1.536 ± 0.007

2.712 ± 0.009
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski