Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter; Caldanaerobacter subterraneus; Caldanaerobacter subterraneus subsp. tengcongensis

Average proteome isoelectric point is 6.73

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2545 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q8R877|Q8R877_CALS4 ABC_transp_aux domain-containing protein OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=TTE2143 PE=4 SV=1
MM1 pKa = 7.61EE2 pKa = 5.14KK3 pKa = 9.49WQCTVCGYY11 pKa = 10.3IYY13 pKa = 10.46DD14 pKa = 4.2PEE16 pKa = 6.17KK17 pKa = 10.88GDD19 pKa = 3.84PSQGIPPGTPFEE31 pKa = 4.45EE32 pKa = 5.71LPDD35 pKa = 3.91DD36 pKa = 4.55WVCPDD41 pKa = 4.2CGAGKK46 pKa = 10.22DD47 pKa = 3.98LFEE50 pKa = 5.36KK51 pKa = 10.13MM52 pKa = 4.33

Molecular weight: 5.82 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|Q8R6L9|MSCS_CALS4 Small-conductance mechanosensitive channel OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=mscS PE=1 SV=1
MM1 pKa = 7.45LRR3 pKa = 11.84TYY5 pKa = 9.82QPKK8 pKa = 9.4KK9 pKa = 7.87RR10 pKa = 11.84HH11 pKa = 5.46RR12 pKa = 11.84KK13 pKa = 8.28KK14 pKa = 9.71VHH16 pKa = 5.38GFRR19 pKa = 11.84KK20 pKa = 9.99RR21 pKa = 11.84MSTKK25 pKa = 10.21AGRR28 pKa = 11.84NVLKK32 pKa = 10.49RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84LKK37 pKa = 10.48GRR39 pKa = 11.84HH40 pKa = 5.75RR41 pKa = 11.84LTAA44 pKa = 4.06

Molecular weight: 5.44 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2545

0

2545

762176

37

2862

299.5

33.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.528 ± 0.044

0.761 ± 0.017

4.948 ± 0.035

8.371 ± 0.065

4.401 ± 0.042

6.872 ± 0.046

1.43 ± 0.018

8.961 ± 0.05

8.784 ± 0.052

9.549 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.544 ± 0.02

4.35 ± 0.035

3.577 ± 0.031

2.336 ± 0.025

4.32 ± 0.038

5.273 ± 0.036

4.62 ± 0.035

7.566 ± 0.041

0.788 ± 0.017

4.022 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski