Halomonas olivaria

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas

Average proteome isoelectric point is 6.39

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7365 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3T1DN19|A0A3T1DN19_9GAMM Uncharacterized protein OS=Halomonas olivaria OX=390919 GN=HORIV_24070 PE=4 SV=1
MM1 pKa = 7.07QGKK4 pKa = 9.31HH5 pKa = 4.5YY6 pKa = 10.57SSRR9 pKa = 11.84GDD11 pKa = 3.91LEE13 pKa = 4.45PSDD16 pKa = 4.01GSEE19 pKa = 3.82VAAQGGVRR27 pKa = 11.84YY28 pKa = 9.19AQGPVTLGLGFVDD41 pKa = 6.13DD42 pKa = 4.01IVEE45 pKa = 4.35GGGNDD50 pKa = 3.28EE51 pKa = 4.21VRR53 pKa = 11.84YY54 pKa = 10.03GLIGSYY60 pKa = 11.09DD61 pKa = 3.45FTDD64 pKa = 3.27QFSARR69 pKa = 11.84LGYY72 pKa = 7.52EE73 pKa = 3.86TRR75 pKa = 11.84DD76 pKa = 3.4EE77 pKa = 4.27NDD79 pKa = 3.15NYY81 pKa = 10.43TPSATGEE88 pKa = 4.05NGFDD92 pKa = 3.55TVGLGGTFTTIPWAFALDD110 pKa = 4.19YY111 pKa = 11.57YY112 pKa = 11.44NIDD115 pKa = 3.15RR116 pKa = 11.84DD117 pKa = 4.16NRR119 pKa = 11.84DD120 pKa = 4.33DD121 pKa = 4.08SNAWAAGSYY130 pKa = 10.53YY131 pKa = 10.39KK132 pKa = 10.72VSSNFDD138 pKa = 3.36VFLEE142 pKa = 4.43LADD145 pKa = 4.16GDD147 pKa = 4.28APTVNRR153 pKa = 11.84DD154 pKa = 3.14TTLGDD159 pKa = 3.98LSDD162 pKa = 3.82DD163 pKa = 4.37VYY165 pKa = 10.82WLTGARR171 pKa = 11.84YY172 pKa = 9.1HH173 pKa = 6.65FF174 pKa = 4.65

Molecular weight: 19.01 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3T1DGK3|A0A3T1DGK3_9GAMM Uncharacterized protein OS=Halomonas olivaria OX=390919 GN=HORIV_02040 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.42RR12 pKa = 11.84KK13 pKa = 9.04RR14 pKa = 11.84AHH16 pKa = 6.12GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.17NGRR28 pKa = 11.84AILARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.95GRR39 pKa = 11.84KK40 pKa = 8.85RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7365

0

7365

1383111

39

1475

187.8

20.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.769 ± 0.044

1.098 ± 0.012

5.232 ± 0.025

6.086 ± 0.029

3.53 ± 0.021

7.69 ± 0.032

2.402 ± 0.02

5.114 ± 0.029

3.012 ± 0.025

11.129 ± 0.037

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.855 ± 0.018

3.015 ± 0.018

4.929 ± 0.025

4.258 ± 0.025

6.463 ± 0.033

6.091 ± 0.027

5.29 ± 0.023

6.981 ± 0.027

1.564 ± 0.016

2.492 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski