Sediminicola luteus

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Sediminicola

Average proteome isoelectric point is 6.43

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3771 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2A4GAC9|A0A2A4GAC9_9FLAO Galactokinase OS=Sediminicola luteus OX=319238 GN=B7P33_05890 PE=3 SV=1
MM1 pKa = 7.4EE2 pKa = 5.18SKK4 pKa = 10.39EE5 pKa = 3.94KK6 pKa = 10.82AMKK9 pKa = 9.97KK10 pKa = 10.4LNISTYY16 pKa = 10.49VIALVLLVLALAVFMGCEE34 pKa = 4.36PDD36 pKa = 5.11DD37 pKa = 4.4SDD39 pKa = 5.47AFPASLPDD47 pKa = 3.45TAAVFTDD54 pKa = 4.6GFSPGLDD61 pKa = 3.13YY62 pKa = 10.89TAFGDD67 pKa = 4.01SKK69 pKa = 10.4VTAFQLDD76 pKa = 3.76EE77 pKa = 4.13EE78 pKa = 4.62VTYY81 pKa = 10.92DD82 pKa = 3.88KK83 pKa = 11.1SDD85 pKa = 2.83SAMRR89 pKa = 11.84FDD91 pKa = 5.49IPNQGDD97 pKa = 3.89PEE99 pKa = 4.24SGYY102 pKa = 11.37AGGIFFDD109 pKa = 3.31KK110 pKa = 10.5TGRR113 pKa = 11.84NLSGYY118 pKa = 9.89NVLSFWGKK126 pKa = 9.88ASQGAIIQEE135 pKa = 4.31LGFGLTDD142 pKa = 3.2TQMYY146 pKa = 6.86RR147 pKa = 11.84TSITDD152 pKa = 3.38VAFSTAWTKK161 pKa = 11.06YY162 pKa = 10.25YY163 pKa = 10.33ILLPDD168 pKa = 4.18PARR171 pKa = 11.84LTMEE175 pKa = 3.78EE176 pKa = 4.28GMFYY180 pKa = 10.59FVDD183 pKa = 3.81TPDD186 pKa = 3.24NGKK189 pKa = 10.73GYY191 pKa = 9.99SFWIDD196 pKa = 3.06EE197 pKa = 4.32LRR199 pKa = 11.84FEE201 pKa = 4.34NSGTIGQVQAYY212 pKa = 7.73IQNGEE217 pKa = 4.35EE218 pKa = 4.07VTSTVFVGQEE228 pKa = 3.99VPVSGLGVSFSLPNGVSQAVNAAPAFFTLASSNPQVAQVVVDD270 pKa = 3.61EE271 pKa = 4.55TTQVSTVRR279 pKa = 11.84ILAQGEE285 pKa = 4.2AVITASMGDD294 pKa = 3.66VAAMGSLTLQVRR306 pKa = 11.84EE307 pKa = 4.59FEE309 pKa = 4.41PAPLPDD315 pKa = 3.99KK316 pKa = 11.06VADD319 pKa = 3.87DD320 pKa = 4.54VISIFSDD327 pKa = 3.34AYY329 pKa = 9.32TNVPVDD335 pKa = 3.97FYY337 pKa = 11.44NGYY340 pKa = 9.09YY341 pKa = 10.63APFQTTVSADD351 pKa = 3.39FTVDD355 pKa = 3.05GDD357 pKa = 4.24HH358 pKa = 6.34VLNYY362 pKa = 10.05INYY365 pKa = 8.29NFVGIEE371 pKa = 3.99FNKK374 pKa = 10.07EE375 pKa = 3.72VPTIDD380 pKa = 3.42ATEE383 pKa = 4.08MTHH386 pKa = 6.19LHH388 pKa = 5.27VDD390 pKa = 3.55IYY392 pKa = 10.7IPEE395 pKa = 4.4ALDD398 pKa = 4.25PNATWRR404 pKa = 11.84VNLRR408 pKa = 11.84DD409 pKa = 4.25FGADD413 pKa = 3.27GNFDD417 pKa = 3.99GGDD420 pKa = 3.53DD421 pKa = 4.27TIASQLLTTASDD433 pKa = 3.64PALVSEE439 pKa = 4.26QWISVDD445 pKa = 2.97MDD447 pKa = 3.04IRR449 pKa = 11.84DD450 pKa = 3.91MANKK454 pKa = 8.38ATLGQIVFDD463 pKa = 4.57AEE465 pKa = 4.79GDD467 pKa = 3.72TSPRR471 pKa = 11.84PSGFYY476 pKa = 10.51VDD478 pKa = 5.44NLYY481 pKa = 10.86LYY483 pKa = 10.38NDD485 pKa = 3.48QGTGGGGPQPIPPTTAAPTPTLDD508 pKa = 3.17AAQVVSIFSDD518 pKa = 3.58AYY520 pKa = 9.95TDD522 pKa = 3.82VPNQGFNQYY531 pKa = 9.31GAATFAEE538 pKa = 4.66IPVADD543 pKa = 4.23NATLNYY549 pKa = 9.04KK550 pKa = 10.35QSDD553 pKa = 3.83NPGGNFQVIEE563 pKa = 4.47LGAEE567 pKa = 3.95NQIDD571 pKa = 3.9ATAMEE576 pKa = 4.64LTDD579 pKa = 3.72FHH581 pKa = 8.03VDD583 pKa = 2.64LWFPNPVNEE592 pKa = 4.07NTAFLLKK599 pKa = 10.24VVNIAPDD606 pKa = 3.33ITSEE610 pKa = 3.79ALIRR614 pKa = 11.84IDD616 pKa = 5.23ANATPAMAQGQWLAIDD632 pKa = 3.94LTMDD636 pKa = 3.3QLQAAGLAANSNIQQVVIDD655 pKa = 4.87LLDD658 pKa = 4.13AGEE661 pKa = 4.27VYY663 pKa = 10.34IDD665 pKa = 3.4NLYY668 pKa = 10.45FSKK671 pKa = 11.26SNGAGGSAPTTSAPEE686 pKa = 3.92PPARR690 pKa = 11.84DD691 pKa = 3.32AADD694 pKa = 3.66VISIFGEE701 pKa = 4.22AYY703 pKa = 9.89TNITGIDD710 pKa = 3.83YY711 pKa = 10.72DD712 pKa = 4.56PNWGQSGHH720 pKa = 5.26MQVNTAFDD728 pKa = 3.68SGDD731 pKa = 3.45GNLALAYY738 pKa = 9.71PSFNYY743 pKa = 10.11QGTDD747 pKa = 3.54FSGNAQNASEE757 pKa = 4.28MEE759 pKa = 4.21FLHH762 pKa = 7.81VDD764 pKa = 3.06IWVPAGTDD772 pKa = 3.22RR773 pKa = 11.84QVKK776 pKa = 9.6VSPINNGTGEE786 pKa = 4.33GEE788 pKa = 4.4VLVSVPLIPGSWNSVDD804 pKa = 5.51LPIADD809 pKa = 3.98FTGMTWDD816 pKa = 3.94SVVQLKK822 pKa = 10.5FDD824 pKa = 3.7GQFNGDD830 pKa = 3.11GSANTDD836 pKa = 3.64PFDD839 pKa = 3.62MYY841 pKa = 11.25LDD843 pKa = 3.25NVYY846 pKa = 10.17FYY848 pKa = 10.44KK849 pKa = 10.75EE850 pKa = 3.86PSAPSAAPTTSAPEE864 pKa = 3.83PLARR868 pKa = 11.84DD869 pKa = 3.38AADD872 pKa = 3.59VISIFGEE879 pKa = 4.22AYY881 pKa = 9.89TNITGIDD888 pKa = 3.83YY889 pKa = 10.72DD890 pKa = 4.56PNWGQSGHH898 pKa = 5.26MQVNTAFDD906 pKa = 4.3PGDD909 pKa = 3.75GNLALAYY916 pKa = 9.71PSFNYY921 pKa = 10.11QGTDD925 pKa = 3.54FSGNAQNASEE935 pKa = 4.28MEE937 pKa = 4.21FLHH940 pKa = 7.81VDD942 pKa = 3.06IWVPAGTDD950 pKa = 3.22RR951 pKa = 11.84QVKK954 pKa = 9.6VSPINNGTGEE964 pKa = 4.33GEE966 pKa = 4.4VLVSVPLTPGAWNSVDD982 pKa = 5.21LPMADD987 pKa = 3.63FTGMTWDD994 pKa = 3.94SVVQLKK1000 pKa = 10.5FDD1002 pKa = 3.7GQFNGDD1008 pKa = 3.11GSANTDD1014 pKa = 3.31PFDD1017 pKa = 3.99IYY1019 pKa = 11.05LDD1021 pKa = 3.23NVYY1024 pKa = 10.14FYY1026 pKa = 10.44KK1027 pKa = 10.7EE1028 pKa = 3.75PSAPSTAPTTSAPAPPVRR1046 pKa = 11.84DD1047 pKa = 3.33AADD1050 pKa = 3.61VISIFGEE1057 pKa = 4.22AYY1059 pKa = 9.89TNITGIDD1066 pKa = 3.83YY1067 pKa = 10.72DD1068 pKa = 4.56PNWGQSGHH1076 pKa = 5.26MQVNTAFDD1084 pKa = 4.3PGDD1087 pKa = 3.75GNLALAYY1094 pKa = 9.71PSFNYY1099 pKa = 10.11QGTDD1103 pKa = 3.54FSGNAQNAATMQFLHH1118 pKa = 7.2VDD1120 pKa = 3.2IWVPAGTDD1128 pKa = 3.22RR1129 pKa = 11.84QVKK1132 pKa = 9.6VSPINNGTGAGEE1144 pKa = 4.21VLVSVPLTPGAWNSVDD1160 pKa = 4.95LPIGDD1165 pKa = 4.06FTGMTWDD1172 pKa = 4.28SVFQLKK1178 pKa = 10.32FDD1180 pKa = 3.85GQFNGDD1186 pKa = 3.11GSANTDD1192 pKa = 3.31PFDD1195 pKa = 3.99IYY1197 pKa = 11.05LDD1199 pKa = 3.23NVYY1202 pKa = 10.14FYY1204 pKa = 10.44KK1205 pKa = 10.7EE1206 pKa = 3.75PSAPSTAPTTSAPAPPVRR1224 pKa = 11.84DD1225 pKa = 3.33AADD1228 pKa = 3.61VISIFGEE1235 pKa = 4.22AYY1237 pKa = 9.67TNITGVDD1244 pKa = 3.77YY1245 pKa = 11.05DD1246 pKa = 4.63PNWGQSGHH1254 pKa = 5.26MQVNTAFDD1262 pKa = 4.3PGDD1265 pKa = 3.75GNLALAYY1272 pKa = 9.89PNFNYY1277 pKa = 10.28QGTDD1281 pKa = 3.53FSGNAQNAASMQFLHH1296 pKa = 7.39VDD1298 pKa = 3.07IWVPAGTDD1306 pKa = 3.22RR1307 pKa = 11.84QVKK1310 pKa = 9.6VSPINNGTGAGEE1322 pKa = 4.21VLVSVPLTPGAWNSVDD1338 pKa = 4.95LPIGDD1343 pKa = 4.06FTGMTWDD1350 pKa = 4.28SVFQLKK1356 pKa = 10.32FDD1358 pKa = 3.85GQFNGDD1364 pKa = 3.11GSANTDD1370 pKa = 3.42PFDD1373 pKa = 3.73VYY1375 pKa = 11.29LDD1377 pKa = 3.31NVYY1380 pKa = 10.22FYY1382 pKa = 11.57KK1383 pKa = 10.9NN1384 pKa = 3.04

Molecular weight: 148.64 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2A4G414|A0A2A4G414_9FLAO Uncharacterized protein OS=Sediminicola luteus OX=319238 GN=B7P33_15560 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.59RR3 pKa = 11.84TFQPSKK9 pKa = 10.15RR10 pKa = 11.84KK11 pKa = 9.6RR12 pKa = 11.84KK13 pKa = 8.29NKK15 pKa = 9.34HH16 pKa = 4.03GFRR19 pKa = 11.84EE20 pKa = 4.2RR21 pKa = 11.84MASANGRR28 pKa = 11.84KK29 pKa = 9.04VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.09GRR39 pKa = 11.84KK40 pKa = 7.97KK41 pKa = 10.66LSVSSEE47 pKa = 3.9LRR49 pKa = 11.84HH50 pKa = 6.16KK51 pKa = 10.53KK52 pKa = 10.04

Molecular weight: 6.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3771

0

3771

1364760

31

6537

361.9

40.56

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.441 ± 0.054

0.756 ± 0.015

5.85 ± 0.049

6.286 ± 0.043

4.905 ± 0.029

7.306 ± 0.04

2.093 ± 0.021

6.441 ± 0.036

6.523 ± 0.06

9.711 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.387 ± 0.024

5.083 ± 0.047

3.978 ± 0.026

3.978 ± 0.025

3.981 ± 0.034

5.952 ± 0.031

5.814 ± 0.064

6.313 ± 0.032

1.261 ± 0.014

3.941 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski