Collinsella stercoris DSM 13279

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; Collinsella stercoris

Average proteome isoelectric point is 6.21

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2527 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B6GA64|B6GA64_9ACTN Toxin-antitoxin system antitoxin component HicB family OS=Collinsella stercoris DSM 13279 OX=445975 GN=COLSTE_00959 PE=4 SV=1
MM1 pKa = 7.09PQHH4 pKa = 6.6RR5 pKa = 11.84NKK7 pKa = 10.82AVVAGLAVTLAFGGVALPAVASTEE31 pKa = 3.99QAPATDD37 pKa = 3.85SDD39 pKa = 4.56PNGVGDD45 pKa = 4.85PAPADD50 pKa = 3.69YY51 pKa = 11.2DD52 pKa = 3.5KK53 pKa = 11.66ADD55 pKa = 3.77YY56 pKa = 11.4YY57 pKa = 11.14EE58 pKa = 4.4GTEE61 pKa = 4.3GVATFASARR70 pKa = 11.84SASTLSPVSLSDD82 pKa = 3.13EE83 pKa = 3.92MKK85 pKa = 10.77YY86 pKa = 8.24FTKK89 pKa = 10.87YY90 pKa = 10.74EE91 pKa = 4.17SGCDD95 pKa = 3.54YY96 pKa = 11.44DD97 pKa = 5.28KK98 pKa = 11.54GLSYY102 pKa = 11.55GDD104 pKa = 4.54GYY106 pKa = 11.64NAMGYY111 pKa = 8.13YY112 pKa = 9.84QFDD115 pKa = 3.2RR116 pKa = 11.84RR117 pKa = 11.84YY118 pKa = 9.89SLLPFIEE125 pKa = 4.0QVYY128 pKa = 10.17GYY130 pKa = 10.84NSTKK134 pKa = 10.53YY135 pKa = 11.11DD136 pKa = 3.51MLRR139 pKa = 11.84AALAYY144 pKa = 10.1RR145 pKa = 11.84DD146 pKa = 3.85VLQNPSYY153 pKa = 11.37EE154 pKa = 4.27MYY156 pKa = 10.36DD157 pKa = 3.38YY158 pKa = 11.11TSRR161 pKa = 11.84QLSAPAQILNGAWHH175 pKa = 7.16AAYY178 pKa = 9.87AADD181 pKa = 3.84PAEE184 pKa = 4.75FSALQDD190 pKa = 3.16SYY192 pKa = 12.07AYY194 pKa = 10.53NNYY197 pKa = 8.97YY198 pKa = 10.8LPVQSSLLNTYY209 pKa = 10.16GVDD212 pKa = 3.22VRR214 pKa = 11.84DD215 pKa = 4.05RR216 pKa = 11.84ADD218 pKa = 3.5CVKK221 pKa = 10.6GLVWGMCNLFGQGGVQKK238 pKa = 10.17FFKK241 pKa = 10.4GANIDD246 pKa = 3.2NSMTDD251 pKa = 3.18RR252 pKa = 11.84EE253 pKa = 5.27LITALCDD260 pKa = 3.54TVVEE264 pKa = 4.92YY265 pKa = 11.38VDD267 pKa = 4.42DD268 pKa = 4.82WYY270 pKa = 10.38PSQPQYY276 pKa = 10.04WDD278 pKa = 2.85GWKK281 pKa = 10.03NRR283 pKa = 11.84YY284 pKa = 9.14KK285 pKa = 10.52KK286 pKa = 10.68EE287 pKa = 3.84KK288 pKa = 8.66ATCLAYY294 pKa = 9.64MDD296 pKa = 4.05QHH298 pKa = 7.08DD299 pKa = 4.75AEE301 pKa = 4.55QNANGQGQTDD311 pKa = 3.93DD312 pKa = 4.05QPNADD317 pKa = 4.82EE318 pKa = 5.23PGQDD322 pKa = 3.87DD323 pKa = 4.2SGAGLPIAPDD333 pKa = 3.44APNGSEE339 pKa = 4.01GQNGDD344 pKa = 3.32GGGSQGDD351 pKa = 3.7ADD353 pKa = 4.1SGEE356 pKa = 4.3SGSDD360 pKa = 2.68GGAAHH365 pKa = 6.97GGDD368 pKa = 3.93SGSDD372 pKa = 3.35GAVTPEE378 pKa = 4.06GGQGSDD384 pKa = 3.22AEE386 pKa = 4.31QNAGGSQNSDD396 pKa = 3.79DD397 pKa = 5.28DD398 pKa = 6.26ADD400 pKa = 4.19DD401 pKa = 4.47APNASVPDD409 pKa = 4.13GNAGQGSSGDD419 pKa = 3.54QEE421 pKa = 4.26NAGGSGSGSAGNSGSAQGGTGNNGGSTQDD450 pKa = 3.35GSAGTGNSAGTDD462 pKa = 3.24GSTGNGSTQDD472 pKa = 3.28TTTGGGSTHH481 pKa = 6.84AGEE484 pKa = 4.84GQGSSDD490 pKa = 5.43DD491 pKa = 4.07EE492 pKa = 4.26QTDD495 pKa = 3.14ASTGDD500 pKa = 3.66EE501 pKa = 4.13EE502 pKa = 6.54DD503 pKa = 4.89DD504 pKa = 4.67GKK506 pKa = 8.19TTPKK510 pKa = 10.82DD511 pKa = 3.15PAPQQNTTRR520 pKa = 11.84DD521 pKa = 3.61PMNSLGTTGDD531 pKa = 3.48KK532 pKa = 7.71TTSGQGDD539 pKa = 4.0GAQGTSASGAGKK551 pKa = 8.6ATAGGLPGTGDD562 pKa = 3.34IATMVLTGAAGLAVAGSSFLSLAKK586 pKa = 10.15KK587 pKa = 9.67EE588 pKa = 4.0RR589 pKa = 11.84AGVDD593 pKa = 3.54EE594 pKa = 4.83SADD597 pKa = 3.9SNDD600 pKa = 3.36EE601 pKa = 3.96

Molecular weight: 61.33 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|B6GD79|B6GD79_9ACTN Serine-type D-Ala-D-Ala carboxypeptidase OS=Collinsella stercoris DSM 13279 OX=445975 GN=COLSTE_02057 PE=3 SV=1
MM1 pKa = 7.52HH2 pKa = 7.32GGAARR7 pKa = 11.84PIGLGVGARR16 pKa = 11.84AFSPKK21 pKa = 9.83RR22 pKa = 11.84PRR24 pKa = 11.84LHH26 pKa = 6.76AWRR29 pKa = 11.84PCAGVFFSFLGRR41 pKa = 11.84GRR43 pKa = 11.84SIRR46 pKa = 11.84VRR48 pKa = 3.4

Molecular weight: 5.23 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2527

0

2527

703773

39

2718

278.5

30.32

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.725 ± 0.075

1.59 ± 0.021

6.19 ± 0.045

6.598 ± 0.051

3.612 ± 0.036

8.324 ± 0.045

2.022 ± 0.024

5.025 ± 0.04

3.546 ± 0.046

9.099 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.77 ± 0.028

2.872 ± 0.034

4.439 ± 0.036

2.849 ± 0.032

6.566 ± 0.065

5.849 ± 0.042

5.269 ± 0.041

7.826 ± 0.05

1.095 ± 0.02

2.736 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski