Sendai virus (strain Z) (SeV) (Sendai virus (strain HVJ))

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Orthoparamyxovirinae; Respirovirus; Murine respirovirus

Average proteome isoelectric point is 7.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 10 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|P04862-2|C-2_SENDZ Isoform of P04862 Isoform C protein of C' protein OS=Sendai virus (strain Z) OX=11198 GN=P/V/C PE=1 SV=3
MM1 pKa = 7.56DD2 pKa = 3.68QDD4 pKa = 4.41AFILKK9 pKa = 9.71EE10 pKa = 3.88DD11 pKa = 4.02SEE13 pKa = 4.98VEE15 pKa = 3.95RR16 pKa = 11.84EE17 pKa = 4.15APGGRR22 pKa = 11.84EE23 pKa = 3.99SLSDD27 pKa = 3.58VIGFLDD33 pKa = 3.71AVLSSEE39 pKa = 4.09PTDD42 pKa = 3.29IGGDD46 pKa = 3.55RR47 pKa = 11.84SWLHH51 pKa = 5.09NTINTPQGPGSAHH64 pKa = 6.25RR65 pKa = 11.84AKK67 pKa = 10.78SEE69 pKa = 4.15GEE71 pKa = 4.42GEE73 pKa = 4.28VSTPSTQDD81 pKa = 2.88NRR83 pKa = 11.84SGEE86 pKa = 4.16EE87 pKa = 3.75SRR89 pKa = 11.84VSGRR93 pKa = 11.84TSKK96 pKa = 11.09PEE98 pKa = 3.94AEE100 pKa = 3.93AHH102 pKa = 6.43AGNLDD107 pKa = 3.26KK108 pKa = 11.5QNIHH112 pKa = 6.5RR113 pKa = 11.84AFGGRR118 pKa = 11.84TGTNSVSQDD127 pKa = 3.37LGDD130 pKa = 4.65GGDD133 pKa = 3.67SGILEE138 pKa = 4.43NPPNEE143 pKa = 3.91RR144 pKa = 11.84GYY146 pKa = 9.84PRR148 pKa = 11.84SGIEE152 pKa = 3.92DD153 pKa = 3.78EE154 pKa = 4.2NRR156 pKa = 11.84EE157 pKa = 4.11MAAHH161 pKa = 6.69PDD163 pKa = 3.54KK164 pKa = 11.08RR165 pKa = 11.84GEE167 pKa = 4.12DD168 pKa = 3.56QAEE171 pKa = 4.07GLPEE175 pKa = 4.03EE176 pKa = 4.6VRR178 pKa = 11.84GSTSLPDD185 pKa = 3.6EE186 pKa = 4.86GEE188 pKa = 4.37GGASNNGRR196 pKa = 11.84SMEE199 pKa = 4.61PGSSHH204 pKa = 5.66SARR207 pKa = 11.84VTGVLVIPSPEE218 pKa = 3.91LEE220 pKa = 4.07EE221 pKa = 4.42AVLRR225 pKa = 11.84RR226 pKa = 11.84NKK228 pKa = 9.86RR229 pKa = 11.84RR230 pKa = 11.84PTNSGSKK237 pKa = 9.48PLTPATVPGTRR248 pKa = 11.84SPPLNRR254 pKa = 11.84YY255 pKa = 8.99NSTGSPPGKK264 pKa = 9.58PPSTQDD270 pKa = 2.94EE271 pKa = 5.06HH272 pKa = 8.35INSGDD277 pKa = 3.51TPAVRR282 pKa = 11.84VKK284 pKa = 10.65DD285 pKa = 4.02RR286 pKa = 11.84KK287 pKa = 9.93PPIGTRR293 pKa = 11.84SVSDD297 pKa = 3.76CPANGRR303 pKa = 11.84SIHH306 pKa = 6.83PGLEE310 pKa = 3.79TDD312 pKa = 3.74STKK315 pKa = 10.79KK316 pKa = 10.53GAA318 pKa = 3.75

Molecular weight: 33.57 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|P69282|V_SENDZ Protein V OS=Sendai virus (strain Z) OX=11198 GN=P/V/C PE=1 SV=1
MM1 pKa = 7.6ADD3 pKa = 3.36IYY5 pKa = 10.85RR6 pKa = 11.84FPKK9 pKa = 10.59FSYY12 pKa = 9.74EE13 pKa = 4.12DD14 pKa = 3.44NGTVEE19 pKa = 4.59PLPLRR24 pKa = 11.84TGPDD28 pKa = 3.01KK29 pKa = 10.99KK30 pKa = 10.56AIPHH34 pKa = 5.1IRR36 pKa = 11.84IVKK39 pKa = 10.01VGDD42 pKa = 3.63PPKK45 pKa = 10.69HH46 pKa = 4.84GVRR49 pKa = 11.84YY50 pKa = 10.03LDD52 pKa = 3.96LLLLGFFEE60 pKa = 4.98TPKK63 pKa = 9.37QTTNLGSVSDD73 pKa = 3.87LTEE76 pKa = 3.94PTSYY80 pKa = 10.56SICGSGSLPIGVAKK94 pKa = 10.76YY95 pKa = 10.52YY96 pKa = 9.98GTDD99 pKa = 3.29QEE101 pKa = 4.62LLKK104 pKa = 11.01ACTDD108 pKa = 3.21LRR110 pKa = 11.84ITVRR114 pKa = 11.84RR115 pKa = 11.84TVRR118 pKa = 11.84AGEE121 pKa = 4.17MIVYY125 pKa = 8.62MVDD128 pKa = 3.46SIGAPLLPWSGRR140 pKa = 11.84LRR142 pKa = 11.84QGMIFNANKK151 pKa = 9.77VALAPQCLPVDD162 pKa = 3.24KK163 pKa = 10.48DD164 pKa = 2.85IRR166 pKa = 11.84LRR168 pKa = 11.84VVFVNGTSLGAITIAKK184 pKa = 9.25IPKK187 pKa = 8.6TLADD191 pKa = 3.79LALPNSISVNLLVTLKK207 pKa = 10.0TGISTEE213 pKa = 4.15QKK215 pKa = 10.47GVLPVLDD222 pKa = 4.08DD223 pKa = 3.73QGEE226 pKa = 4.28KK227 pKa = 10.49KK228 pKa = 10.88LNFMVHH234 pKa = 6.52LGLIRR239 pKa = 11.84RR240 pKa = 11.84KK241 pKa = 9.27VGKK244 pKa = 9.46IYY246 pKa = 10.67SVEE249 pKa = 4.02YY250 pKa = 9.84CKK252 pKa = 11.04SKK254 pKa = 10.18IEE256 pKa = 3.93RR257 pKa = 11.84MRR259 pKa = 11.84LIFSLGLIGGISFHH273 pKa = 5.57VQVNGTLSKK282 pKa = 10.14TFMSQLAWKK291 pKa = 10.01RR292 pKa = 11.84AVCFPLMDD300 pKa = 4.24VNPHH304 pKa = 4.81MNMVIWAASVEE315 pKa = 4.3ITGVDD320 pKa = 3.49AVFQPAIPRR329 pKa = 11.84DD330 pKa = 3.38FRR332 pKa = 11.84YY333 pKa = 10.38YY334 pKa = 10.21PNVVAKK340 pKa = 10.68NIGRR344 pKa = 11.84IRR346 pKa = 11.84KK347 pKa = 8.53LL348 pKa = 3.16

Molecular weight: 38.56 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

3

10

3475

175

568

347.5

38.52

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.216 ± 0.587

1.065 ± 0.286

5.295 ± 0.412

8.144 ± 1.137

1.957 ± 0.407

7.453 ± 0.844

1.871 ± 0.161

6.129 ± 0.866

5.928 ± 0.618

8.863 ± 0.88

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.561 ± 0.403

3.54 ± 0.482

5.468 ± 0.802

3.914 ± 0.553

7.367 ± 0.511

8.489 ± 0.923

6.647 ± 0.269

6.187 ± 0.631

0.806 ± 0.181

2.101 ± 0.314
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski