Caproiciproducens sp. NJN-50

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Oscillospiraceae; Caproiciproducens; unclassified Caproiciproducens

Average proteome isoelectric point is 6.48

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3089 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A410Q3Q7|A0A410Q3Q7_9FIRM DUF87 domain-containing protein OS=Caproiciproducens sp. NJN-50 OX=2507162 GN=EQM14_09010 PE=4 SV=1
MM1 pKa = 7.48KK2 pKa = 10.05KK3 pKa = 10.16YY4 pKa = 10.52RR5 pKa = 11.84CIPCGYY11 pKa = 9.66IYY13 pKa = 10.6DD14 pKa = 4.44PALGDD19 pKa = 3.93PDD21 pKa = 4.82SGIGPGTVFEE31 pKa = 5.37DD32 pKa = 5.94LPDD35 pKa = 4.02DD36 pKa = 4.05WQCPICFVGKK46 pKa = 10.37DD47 pKa = 3.32EE48 pKa = 4.82FEE50 pKa = 4.39PVEE53 pKa = 4.21DD54 pKa = 3.8

Molecular weight: 6.04 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A410PZ63|A0A410PZ63_9FIRM GNAT family N-acetyltransferase OS=Caproiciproducens sp. NJN-50 OX=2507162 GN=EQM14_00370 PE=4 SV=1
MM1 pKa = 7.0QLAPRR6 pKa = 11.84RR7 pKa = 11.84AQDD10 pKa = 2.82ASLAYY15 pKa = 9.98GSHH18 pKa = 6.66DD19 pKa = 4.08CDD21 pKa = 3.75RR22 pKa = 11.84AACLAEE28 pKa = 3.96PLALGRR34 pKa = 11.84FFYY37 pKa = 9.37GTAKK41 pKa = 10.56APNGDD46 pKa = 3.59SSVTLPGVSPVLSRR60 pKa = 11.84RR61 pKa = 11.84NLLRR65 pKa = 11.84AKK67 pKa = 10.01VEE69 pKa = 3.83RR70 pKa = 11.84AKK72 pKa = 10.82DD73 pKa = 3.8GRR75 pKa = 11.84CSRR78 pKa = 11.84KK79 pKa = 9.58FMSLRR84 pKa = 11.84PRR86 pKa = 11.84PPP88 pKa = 3.03

Molecular weight: 9.6 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3089

0

3089

945004

31

1435

305.9

33.74

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.912 ± 0.052

1.62 ± 0.017

5.328 ± 0.033

6.428 ± 0.048

4.172 ± 0.032

8.057 ± 0.048

1.663 ± 0.018

6.441 ± 0.042

5.639 ± 0.039

9.598 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.758 ± 0.021

3.716 ± 0.027

4.057 ± 0.031

3.152 ± 0.024

5.501 ± 0.044

6.516 ± 0.041

5.225 ± 0.041

7.02 ± 0.034

0.864 ± 0.014

3.331 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski