Propionibacterium sp. oral taxon 192 str. F0372

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Propionibacteriales; Propionibacteriaceae; Propionibacterium; unclassified Propionibacterium; Propionibacterium sp. oral taxon 192

Average proteome isoelectric point is 6.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2523 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|S3WYA1|S3WYA1_9ACTN Uncharacterized protein OS=Propionibacterium sp. oral taxon 192 str. F0372 OX=1203605 GN=HMPREF1531_02197 PE=4 SV=1
MM1 pKa = 8.28DD2 pKa = 4.3IPAEE6 pKa = 3.77LRR8 pKa = 11.84YY9 pKa = 10.29SIEE12 pKa = 4.24HH13 pKa = 5.16EE14 pKa = 4.08WVRR17 pKa = 11.84IDD19 pKa = 4.2GSVARR24 pKa = 11.84IGVTAYY30 pKa = 8.01ATSALGDD37 pKa = 3.49IVYY40 pKa = 10.53VSLPTVGSSVVAQDD54 pKa = 3.11ACGEE58 pKa = 4.16LEE60 pKa = 4.27STKK63 pKa = 10.73SVSDD67 pKa = 3.41LFAPVSGVVTSVNNAVIEE85 pKa = 4.14NPEE88 pKa = 4.34SIGTDD93 pKa = 3.31PYY95 pKa = 11.37GEE97 pKa = 4.09GWLFDD102 pKa = 4.16VEE104 pKa = 5.35LSDD107 pKa = 4.36PSQVDD112 pKa = 3.4TLLNASGYY120 pKa = 8.97AAHH123 pKa = 7.04VEE125 pKa = 4.24QQGG128 pKa = 3.09

Molecular weight: 13.47 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|S3WWE5|S3WWE5_9ACTN Uncharacterized protein OS=Propionibacterium sp. oral taxon 192 str. F0372 OX=1203605 GN=HMPREF1531_02292 PE=4 SV=1
MM1 pKa = 7.12LTGTRR6 pKa = 11.84RR7 pKa = 11.84LHH9 pKa = 4.18QHH11 pKa = 6.39RR12 pKa = 11.84GRR14 pKa = 11.84GVRR17 pKa = 11.84SITVPTIRR25 pKa = 11.84RR26 pKa = 11.84GPITRR31 pKa = 11.84ANQPVLPGRR40 pKa = 11.84RR41 pKa = 11.84PAQPSLPMRR50 pKa = 11.84DD51 pKa = 3.35GNRR54 pKa = 11.84PLSLLQAGTIVRR66 pKa = 11.84PATPAQRR73 pKa = 11.84WQFTDD78 pKa = 2.99RR79 pKa = 11.84GLALIMGIVAVIFGAAVVFIITQFIALGAPLAA111 pKa = 4.47

Molecular weight: 12.05 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2523

0

2523

805660

21

2852

319.3

34.49

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.439 ± 0.053

0.965 ± 0.015

6.013 ± 0.042

5.646 ± 0.043

2.964 ± 0.03

8.607 ± 0.051

2.246 ± 0.02

4.978 ± 0.033

2.527 ± 0.032

9.793 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.507 ± 0.024

2.557 ± 0.026

5.178 ± 0.041

3.361 ± 0.025

6.724 ± 0.046

6.054 ± 0.04

6.264 ± 0.044

8.677 ± 0.05

1.564 ± 0.025

1.936 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski