Brevundimonas abyssalis TAR-001

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas; Brevundimonas abyssalis

Average proteome isoelectric point is 6.3

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2946 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|U2YSP1|U2YSP1_9CAUL Probable oxidoreductase OS=Brevundimonas abyssalis TAR-001 OX=1391729 GN=MBEBAB_0711 PE=4 SV=1
MM1 pKa = 7.13VRR3 pKa = 11.84GPDD6 pKa = 4.37GSWHH10 pKa = 6.67CNDD13 pKa = 5.47DD14 pKa = 3.8GAGDD18 pKa = 4.56LNPLFAATAPQSGRR32 pKa = 11.84YY33 pKa = 8.53DD34 pKa = 2.67IWMGRR39 pKa = 11.84YY40 pKa = 8.65SQGTTNAVLNISEE53 pKa = 4.51VIGNVSTAHH62 pKa = 6.67GSLDD66 pKa = 4.29DD67 pKa = 4.23DD68 pKa = 4.94CEE70 pKa = 4.19YY71 pKa = 11.58ADD73 pKa = 5.58WDD75 pKa = 6.16DD76 pKa = 4.08PDD78 pKa = 3.59CWW80 pKa = 3.77

Molecular weight: 8.7 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|U3AY08|U3AY08_9CAUL Uncharacterized protein OS=Brevundimonas abyssalis TAR-001 OX=1391729 GN=MBEBAB_1833 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.4RR3 pKa = 11.84TYY5 pKa = 10.2QPSRR9 pKa = 11.84LVRR12 pKa = 11.84KK13 pKa = 8.99RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.7GFRR19 pKa = 11.84SRR21 pKa = 11.84MATKK25 pKa = 10.2NGQKK29 pKa = 9.53IVARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.77GRR39 pKa = 11.84KK40 pKa = 9.04RR41 pKa = 11.84LTAA44 pKa = 4.18

Molecular weight: 5.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2946

0

2946

854767

37

1644

290.1

31.31

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.675 ± 0.074

0.722 ± 0.014

6.171 ± 0.035

5.893 ± 0.042

3.433 ± 0.031

9.007 ± 0.041

1.88 ± 0.022

4.413 ± 0.034

2.39 ± 0.039

9.837 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.443 ± 0.023

2.266 ± 0.028

5.537 ± 0.032

3.099 ± 0.029

7.872 ± 0.045

4.978 ± 0.033

5.313 ± 0.032

7.549 ± 0.033

1.519 ± 0.022

2.002 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski