Plasticicumulans acidivorans

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Gammaproteobacteria incertae sedis; Candidatus Competibacteraceae; Plasticicumulans

Average proteome isoelectric point is 6.42

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3852 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A317MRI1|A0A317MRI1_9GAMM 30S ribosomal protein S1 OS=Plasticicumulans acidivorans OX=886464 GN=C7443_11036 PE=3 SV=1
MM1 pKa = 7.09TKK3 pKa = 10.52KK4 pKa = 10.15NALSALVGLALAAPLGAQAALLFDD28 pKa = 4.98PDD30 pKa = 3.97GAGAAYY36 pKa = 7.61GTYY39 pKa = 10.3AIDD42 pKa = 4.17LLDD45 pKa = 3.91WSPTSIIAVGGNQAIQNYY63 pKa = 9.11IYY65 pKa = 10.3NATYY69 pKa = 8.06GTSLDD74 pKa = 3.75TTFTVYY80 pKa = 10.03TMAKK84 pKa = 10.17LSTGQLNSNNQFTMGGSSEE103 pKa = 3.97ITVLLGYY110 pKa = 7.72TATVTFADD118 pKa = 3.71ATTGISTFAQVAGSNFVEE136 pKa = 5.06MYY138 pKa = 11.05YY139 pKa = 10.96DD140 pKa = 3.99DD141 pKa = 5.17TPDD144 pKa = 4.25ADD146 pKa = 4.22PLTGTGFSDD155 pKa = 3.65GQVIFSSTVTAQNGFFSADD174 pKa = 3.19QSGATTTLDD183 pKa = 3.16QSANGDD189 pKa = 3.48DD190 pKa = 3.4WGGQQTVTGVGISGNVASVLPATVIDD216 pKa = 3.6TTFFKK221 pKa = 10.69SVPLLTFITTNISLNTPFTSVDD243 pKa = 3.37PSQGYY248 pKa = 10.19YY249 pKa = 9.1STTGLAAPDD258 pKa = 3.39IAPNIGTVNGSLTSGGVDD276 pKa = 4.65FIFSSDD282 pKa = 3.28FNTSVNAVPEE292 pKa = 4.25PASLALLGIGLGAIGTLANRR312 pKa = 11.84RR313 pKa = 11.84RR314 pKa = 11.84KK315 pKa = 7.91TKK317 pKa = 10.56

Molecular weight: 32.51 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A317MZ59|A0A317MZ59_9GAMM Single-strand selective monofunctional uracil DNA glycosylase OS=Plasticicumulans acidivorans OX=886464 GN=C7443_10165 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 8.98RR4 pKa = 11.84TFQPSVIHH12 pKa = 6.94RR13 pKa = 11.84KK14 pKa = 7.6RR15 pKa = 11.84THH17 pKa = 5.78GFRR20 pKa = 11.84ARR22 pKa = 11.84MATKK26 pKa = 10.41NGRR29 pKa = 11.84LVINARR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.19GRR40 pKa = 11.84ARR42 pKa = 11.84LSAA45 pKa = 3.91

Molecular weight: 5.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3852

0

3852

1284836

28

2843

333.6

36.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.354 ± 0.072

1.141 ± 0.015

5.476 ± 0.029

5.661 ± 0.038

3.401 ± 0.028

8.33 ± 0.044

2.335 ± 0.02

4.346 ± 0.031

2.271 ± 0.03

11.988 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.988 ± 0.017

2.256 ± 0.022

5.207 ± 0.028

3.671 ± 0.03

7.767 ± 0.045

5.138 ± 0.038

4.728 ± 0.034

7.192 ± 0.037

1.459 ± 0.017

2.291 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski