Apis mellifera associated microvirus 3

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3Q8U5Y5|A0A3Q8U5Y5_9VIRU Nonstructural protein OS=Apis mellifera associated microvirus 3 OX=2494758 PE=4 SV=1
MM1 pKa = 7.32SKK3 pKa = 10.57VEE5 pKa = 3.63IRR7 pKa = 11.84LPYY10 pKa = 9.06VQYY13 pKa = 10.97DD14 pKa = 4.12DD15 pKa = 5.51PGLTCPEE22 pKa = 4.08PTLTQQNFADD32 pKa = 3.66EE33 pKa = 4.64CDD35 pKa = 3.89FNNVLKK41 pKa = 10.58KK42 pKa = 9.76WEE44 pKa = 3.89QSGLITHH51 pKa = 7.24LNPAQPQYY59 pKa = 11.76GDD61 pKa = 3.44VFDD64 pKa = 3.93IADD67 pKa = 3.66YY68 pKa = 11.27QEE70 pKa = 4.44ALNTVIKK77 pKa = 10.94AEE79 pKa = 4.02AAFAALPAALRR90 pKa = 11.84DD91 pKa = 3.68RR92 pKa = 11.84FQNDD96 pKa = 3.46PANLLAFVEE105 pKa = 5.08DD106 pKa = 3.55SANYY110 pKa = 10.03EE111 pKa = 3.72EE112 pKa = 4.84ALRR115 pKa = 11.84LGLVGPRR122 pKa = 11.84PSAAEE127 pKa = 3.95RR128 pKa = 11.84PHH130 pKa = 6.27EE131 pKa = 4.69SGVADD136 pKa = 4.12EE137 pKa = 4.97GQPPQAATT145 pKa = 3.34

Molecular weight: 15.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3Q8U5M5|A0A3Q8U5M5_9VIRU Major capsid protein OS=Apis mellifera associated microvirus 3 OX=2494758 PE=3 SV=1
MM1 pKa = 7.37LNSRR5 pKa = 11.84SMKK8 pKa = 9.89RR9 pKa = 11.84LEE11 pKa = 4.46GVHH14 pKa = 6.79PDD16 pKa = 3.24LVKK19 pKa = 10.83VVLRR23 pKa = 11.84AAEE26 pKa = 4.05LSDD29 pKa = 3.23VQFIITEE36 pKa = 4.33GLRR39 pKa = 11.84SPEE42 pKa = 3.65RR43 pKa = 11.84QKK45 pKa = 11.39RR46 pKa = 11.84LFEE49 pKa = 4.68SGASRR54 pKa = 11.84TLKK57 pKa = 10.34SRR59 pKa = 11.84HH60 pKa = 4.73LTGHH64 pKa = 6.22AVDD67 pKa = 4.06VAALVDD73 pKa = 4.47GAIVWSWHH81 pKa = 5.71LYY83 pKa = 8.64PRR85 pKa = 11.84IAAAFKK91 pKa = 10.35AAAAEE96 pKa = 4.01LSVPIVWGGSWPKK109 pKa = 10.25FRR111 pKa = 11.84DD112 pKa = 4.12GPHH115 pKa = 6.49FEE117 pKa = 4.78LSSAVYY123 pKa = 10.03RR124 pKa = 4.26

Molecular weight: 13.79 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1410

86

526

235.0

26.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.064 ± 1.631

0.922 ± 0.522

4.681 ± 0.492

5.461 ± 1.159

5.035 ± 0.655

6.879 ± 0.745

2.482 ± 0.594

3.759 ± 0.331

4.184 ± 0.806

8.582 ± 0.414

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.128 ± 0.389

4.255 ± 1.068

6.028 ± 0.91

5.035 ± 0.542

6.028 ± 0.92

6.241 ± 0.799

5.461 ± 1.049

6.525 ± 0.5

1.418 ± 0.416

3.83 ± 0.835
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski