Parendozoicomonas haliclonae

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Endozoicomonadaceae; Parendozoicomonas

Average proteome isoelectric point is 6.05

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4695 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1X7AIY5|A0A1X7AIY5_9GAMM Hemin receptor OS=Parendozoicomonas haliclonae OX=1960125 GN=hemR PE=3 SV=1
MM1 pKa = 6.7FTVGEE6 pKa = 4.27VTGEE10 pKa = 4.04VRR12 pKa = 11.84AVAPDD17 pKa = 3.72GSSRR21 pKa = 11.84IVRR24 pKa = 11.84EE25 pKa = 3.99GDD27 pKa = 3.33SLLPGEE33 pKa = 4.3TLEE36 pKa = 4.91AEE38 pKa = 4.48EE39 pKa = 4.56GAQAILLFPDD49 pKa = 4.19GRR51 pKa = 11.84QLALPAGGTLTLPATTLSTQITDD74 pKa = 3.68LTEE77 pKa = 4.27SDD79 pKa = 3.81QSDD82 pKa = 3.77EE83 pKa = 4.89LKK85 pKa = 11.03ASDD88 pKa = 4.95DD89 pKa = 3.94SEE91 pKa = 4.67TIANSQADD99 pKa = 3.6GMLFPDD105 pKa = 4.02ISSSGFFEE113 pKa = 4.63SGPVSYY119 pKa = 10.89SADD122 pKa = 3.44SPNHH126 pKa = 5.35QEE128 pKa = 3.87NTPAASGQIGGGSSGPIAGLGSTPTLARR156 pKa = 11.84DD157 pKa = 3.62GSLGNSLDD165 pKa = 3.46SGVRR169 pKa = 11.84DD170 pKa = 3.03IGYY173 pKa = 7.52TSSRR177 pKa = 11.84GPVFSQSSDD186 pKa = 3.17PGISSGLSTVSSAGAIASSPSTAANSPIALSEE218 pKa = 4.0ALASGSGASSNTTPIISHH236 pKa = 5.61PTIVSSSATGGAVISSAQVQTAVSSAPATTSTPSTAPQQTSTQTITPASPSTPEE290 pKa = 3.74PAAQQATPTPTPEE303 pKa = 4.0PVVAASTTADD313 pKa = 3.04TGSVVFGQSLVQQSGLLSNDD333 pKa = 2.72QGTGITLSRR342 pKa = 11.84VGDD345 pKa = 3.65TDD347 pKa = 3.24ILEE350 pKa = 4.65TGSTTIQGQYY360 pKa = 10.86GSLSIQADD368 pKa = 3.06GMYY371 pKa = 10.1NYY373 pKa = 8.36TAASVDD379 pKa = 3.57LHH381 pKa = 8.53SDD383 pKa = 3.59MVAHH387 pKa = 6.95WAFNEE392 pKa = 4.54SVGSASVQDD401 pKa = 3.85SSIMDD406 pKa = 3.82SVTDD410 pKa = 3.63TGTLNNNASIVSGGRR425 pKa = 11.84TGNALQLDD433 pKa = 4.05GTGDD437 pKa = 3.83YY438 pKa = 11.39VSFADD443 pKa = 3.7SVEE446 pKa = 4.24INTPTSDD453 pKa = 2.56ISARR457 pKa = 11.84TISLFFQPDD466 pKa = 3.43SATSLSDD473 pKa = 3.04RR474 pKa = 11.84QVIYY478 pKa = 10.99EE479 pKa = 4.33EE480 pKa = 5.04GGTTNGFIIYY490 pKa = 9.3IQSNTLYY497 pKa = 10.26AGAYY501 pKa = 9.33SSSTGWTGHH510 pKa = 5.61YY511 pKa = 10.14FSTDD515 pKa = 2.42ISNLDD520 pKa = 3.25TSQWHH525 pKa = 6.55SIVLSLDD532 pKa = 2.95ASTNTMEE539 pKa = 4.13AWLDD543 pKa = 3.51GASIGEE549 pKa = 4.04ISNAQAVASHH559 pKa = 6.71ASDD562 pKa = 2.95IRR564 pKa = 11.84LGGSGDD570 pKa = 3.44GNLFHH575 pKa = 7.87DD576 pKa = 5.6GEE578 pKa = 4.46QTGAFNFNGKK588 pKa = 8.84IDD590 pKa = 3.65EE591 pKa = 4.15VRR593 pKa = 11.84VYY595 pKa = 11.05NRR597 pKa = 11.84ALNEE601 pKa = 4.03QEE603 pKa = 4.26VSLLHH608 pKa = 6.57SGNTSATEE616 pKa = 3.75IFNYY620 pKa = 8.83TATDD624 pKa = 3.55SAGGTSSSTLTLTVSTPSNISPVAVDD650 pKa = 4.24DD651 pKa = 4.29VLSVMSDD658 pKa = 2.59QSAAINSVAGQGLLGNDD675 pKa = 3.44RR676 pKa = 11.84DD677 pKa = 4.19AEE679 pKa = 4.43GDD681 pKa = 3.79SLTVTRR687 pKa = 11.84VGTTDD692 pKa = 3.01VAASGTTSITGTYY705 pKa = 7.08GTLVIAANGTYY716 pKa = 10.06SYY718 pKa = 11.09TPLNSAANGGTDD730 pKa = 2.99TFTYY734 pKa = 9.37TVSDD738 pKa = 3.6GTTTSTANLTVNVIADD754 pKa = 4.03GSANADD760 pKa = 3.57TLTVTEE766 pKa = 4.72SGFSASAVYY775 pKa = 9.83MLDD778 pKa = 3.18EE779 pKa = 4.93TGGQDD784 pKa = 3.36YY785 pKa = 10.61LAVVDD790 pKa = 4.12TEE792 pKa = 4.61SGVSHH797 pKa = 7.29RR798 pKa = 11.84LGAITGSSASRR809 pKa = 11.84KK810 pKa = 6.58TLAMGPDD817 pKa = 3.21GTLYY821 pKa = 9.74VTDD824 pKa = 3.71STNLYY829 pKa = 8.81TLDD832 pKa = 4.58PSTQALTLVGAHH844 pKa = 6.13GVTDD848 pKa = 3.5SMSFIGLTVAPDD860 pKa = 3.54GTIYY864 pKa = 10.06AAKK867 pKa = 9.85YY868 pKa = 9.48DD869 pKa = 3.61GHH871 pKa = 8.25IYY873 pKa = 9.34TLNPSTGAATDD884 pKa = 3.71LGGVSGFEE892 pKa = 4.23NNWGDD897 pKa = 4.71LVWHH901 pKa = 7.25DD902 pKa = 3.51GALYY906 pKa = 7.98TQAYY910 pKa = 7.0TYY912 pKa = 11.18TNGQSIYY919 pKa = 9.62QFVRR923 pKa = 11.84IEE925 pKa = 3.95PSNSGFTATPLPNASDD941 pKa = 3.62AGSLHH946 pKa = 7.2GITSVNGEE954 pKa = 3.88LRR956 pKa = 11.84GVVWSYY962 pKa = 11.2TGGEE966 pKa = 4.41TVTIDD971 pKa = 3.34TTTGLVSSRR980 pKa = 11.84APVTGAAKK988 pKa = 10.21IEE990 pKa = 4.44DD991 pKa = 4.15SASSGTSMAGNVLTNDD1007 pKa = 3.19TGTTGVTTVALPDD1020 pKa = 3.94GTSSTVSNGGATIQGTYY1037 pKa = 8.63GTLIMQTDD1045 pKa = 3.86GSYY1048 pKa = 10.23IYY1050 pKa = 10.38TLDD1053 pKa = 3.62NSLEE1057 pKa = 4.1ATNNLASEE1065 pKa = 4.4EE1066 pKa = 4.33TGTDD1070 pKa = 2.63RR1071 pKa = 11.84FVYY1074 pKa = 9.17TASTTGGSTQSILTVFVNGSSEE1096 pKa = 4.57VVTTDD1101 pKa = 2.64AATFSNYY1108 pKa = 9.5NVMTSVDD1115 pKa = 3.86ASSSTIPIDD1124 pKa = 4.05FTITTQNDD1132 pKa = 3.04SDD1134 pKa = 4.81KK1135 pKa = 9.86ITEE1138 pKa = 4.06IVISGVNGSTFNVPSVLTDD1157 pKa = 2.94NGTITGNTSNSSEE1170 pKa = 4.35FVWRR1174 pKa = 11.84ATPGTNAGLDD1184 pKa = 3.67SFDD1187 pKa = 3.86AASAGLTLATINGSQAWGQHH1207 pKa = 4.76MGISATVSEE1216 pKa = 4.59YY1217 pKa = 11.22DD1218 pKa = 3.59SNGATTSSWTSTSAIHH1234 pKa = 5.41TTLAGIDD1241 pKa = 3.5HH1242 pKa = 6.81TRR1244 pKa = 11.84TGTSGDD1250 pKa = 3.63DD1251 pKa = 3.52TLTGSSDD1258 pKa = 2.45TWTNIDD1264 pKa = 4.08EE1265 pKa = 5.23FIGGAGNDD1273 pKa = 3.58TMTGGSGSDD1282 pKa = 3.15FYY1284 pKa = 11.55VWRR1287 pKa = 11.84GADD1290 pKa = 3.31VGTSSSPAIDD1300 pKa = 4.2TITDD1304 pKa = 4.0FSAGRR1309 pKa = 11.84LGDD1312 pKa = 3.74VLDD1315 pKa = 4.56LRR1317 pKa = 11.84EE1318 pKa = 4.8LLPDD1322 pKa = 3.67TAEE1325 pKa = 4.05STLDD1329 pKa = 3.37EE1330 pKa = 4.4FLSFSFADD1338 pKa = 3.79GNTTIGVSTTAGGPVVQNIVLDD1360 pKa = 4.03NVDD1363 pKa = 4.19LSSSFGTTDD1372 pKa = 2.93VTQLTNQLTDD1382 pKa = 3.06NGNLLTT1388 pKa = 4.76

Molecular weight: 141.22 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1X7AJD2|A0A1X7AJD2_9GAMM Histone H1-like protein HC2 OS=Parendozoicomonas haliclonae OX=1960125 GN=hctB PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.49RR12 pKa = 11.84KK13 pKa = 7.97RR14 pKa = 11.84THH16 pKa = 5.89GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84AVLNRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.7GRR39 pKa = 11.84KK40 pKa = 8.85RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4695

0

4695

1626144

29

7743

346.4

38.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.909 ± 0.035

1.106 ± 0.014

5.6 ± 0.04

6.361 ± 0.037

3.781 ± 0.025

7.297 ± 0.034

2.258 ± 0.018

5.612 ± 0.029

4.605 ± 0.038

10.484 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.702 ± 0.022

3.838 ± 0.028

4.551 ± 0.031

4.556 ± 0.033

5.338 ± 0.03

6.68 ± 0.037

5.511 ± 0.033

6.707 ± 0.031

1.295 ± 0.013

2.807 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski