Vernonia crinkle betasatellite

Taxonomy: Viruses; Tolecusatellitidae; Betasatellite

Average proteome isoelectric point is 4.91

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L4AB17|A0A1L4AB17_9VIRU BetaC1 protein OS=Vernonia crinkle betasatellite OX=1925152 GN=betaC1 PE=4 SV=1
MM1 pKa = 7.56PHH3 pKa = 6.39TATTLTMIKK12 pKa = 9.28FTTNTTLPSPNICIIKK28 pKa = 10.58LEE30 pKa = 4.14ITSANQPYY38 pKa = 9.93LVKK41 pKa = 10.54HH42 pKa = 6.57KK43 pKa = 10.64ISIPYY48 pKa = 8.53TYY50 pKa = 10.13RR51 pKa = 11.84DD52 pKa = 3.51IITPFDD58 pKa = 3.62LQGNDD63 pKa = 3.49TLISLALRR71 pKa = 11.84FAFNAKK77 pKa = 9.95EE78 pKa = 3.86YY79 pKa = 11.14GEE81 pKa = 4.99LKK83 pKa = 10.38IEE85 pKa = 5.13DD86 pKa = 4.11IIEE89 pKa = 4.28LVDD92 pKa = 5.6LMVLQNDD99 pKa = 3.92SFVDD103 pKa = 3.3IDD105 pKa = 4.05VEE107 pKa = 3.94ASYY110 pKa = 10.9TNRR113 pKa = 11.84RR114 pKa = 11.84TITQQ118 pKa = 3.21

Molecular weight: 13.45 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L4AB17|A0A1L4AB17_9VIRU BetaC1 protein OS=Vernonia crinkle betasatellite OX=1925152 GN=betaC1 PE=4 SV=1
MM1 pKa = 7.56PHH3 pKa = 6.39TATTLTMIKK12 pKa = 9.28FTTNTTLPSPNICIIKK28 pKa = 10.58LEE30 pKa = 4.14ITSANQPYY38 pKa = 9.93LVKK41 pKa = 10.54HH42 pKa = 6.57KK43 pKa = 10.64ISIPYY48 pKa = 8.53TYY50 pKa = 10.13RR51 pKa = 11.84DD52 pKa = 3.51IITPFDD58 pKa = 3.62LQGNDD63 pKa = 3.49TLISLALRR71 pKa = 11.84FAFNAKK77 pKa = 9.95EE78 pKa = 3.86YY79 pKa = 11.14GEE81 pKa = 4.99LKK83 pKa = 10.38IEE85 pKa = 5.13DD86 pKa = 4.11IIEE89 pKa = 4.28LVDD92 pKa = 5.6LMVLQNDD99 pKa = 3.92SFVDD103 pKa = 3.3IDD105 pKa = 4.05VEE107 pKa = 3.94ASYY110 pKa = 10.9TNRR113 pKa = 11.84RR114 pKa = 11.84TITQQ118 pKa = 3.21

Molecular weight: 13.45 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

118

118

118

118.0

13.45

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.085 ± 0.0

0.847 ± 0.0

6.78 ± 0.0

5.085 ± 0.0

4.237 ± 0.0

1.695 ± 0.0

1.695 ± 0.0

12.712 ± 0.0

5.085 ± 0.0

10.169 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.542 ± 0.0

5.932 ± 0.0

5.085 ± 0.0

3.39 ± 0.0

3.39 ± 0.0

5.085 ± 0.0

12.712 ± 0.0

4.237 ± 0.0

0.0 ± 0.0

4.237 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski