Suttonella indologenes

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Cardiobacteriales; Cardiobacteriaceae;

Average proteome isoelectric point is 6.53

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2313 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A380MXZ5|A0A380MXZ5_9GAMM DNA topoisomerase 4 subunit A OS=Suttonella indologenes OX=13276 GN=parC PE=3 SV=1
MM1 pKa = 7.63SDD3 pKa = 3.53VEE5 pKa = 4.36IFDD8 pKa = 4.22AEE10 pKa = 4.74VVFTQAAADD19 pKa = 3.86KK20 pKa = 9.93VASLMAEE27 pKa = 4.23EE28 pKa = 4.86EE29 pKa = 3.89NDD31 pKa = 3.61ALKK34 pKa = 10.97LRR36 pKa = 11.84VYY38 pKa = 9.07VTGGGCSGFQYY49 pKa = 10.92GFMFDD54 pKa = 3.74EE55 pKa = 5.33APQEE59 pKa = 4.0GDD61 pKa = 3.11AVAVTNGVTLLIDD74 pKa = 4.37SISYY78 pKa = 9.27PYY80 pKa = 9.59LTGAEE85 pKa = 3.5IDD87 pKa = 3.54YY88 pKa = 11.26RR89 pKa = 11.84EE90 pKa = 4.29DD91 pKa = 3.08VKK93 pKa = 11.15GAQFVIRR100 pKa = 11.84NPNAQSTCGCGSSFTAA116 pKa = 4.67

Molecular weight: 12.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A380N0L5|A0A380N0L5_9GAMM Octaprenyl-diphosphate synthase OS=Suttonella indologenes OX=13276 GN=ispB PE=3 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSNVSRR13 pKa = 11.84KK14 pKa = 7.46RR15 pKa = 11.84THH17 pKa = 6.15GFRR20 pKa = 11.84ARR22 pKa = 11.84MATANGRR29 pKa = 11.84KK30 pKa = 8.91VLSRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.11GRR40 pKa = 11.84HH41 pKa = 5.34RR42 pKa = 11.84LTVV45 pKa = 3.07

Molecular weight: 5.27 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2313

0

2313

731157

30

5383

316.1

35.02

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.618 ± 0.078

0.985 ± 0.021

5.314 ± 0.069

5.951 ± 0.053

3.992 ± 0.044

7.025 ± 0.065

2.403 ± 0.032

6.615 ± 0.047

4.851 ± 0.061

10.506 ± 0.097

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.404 ± 0.037

4.154 ± 0.062

3.907 ± 0.037

5.135 ± 0.058

5.187 ± 0.063

6.025 ± 0.046

4.617 ± 0.069

5.936 ± 0.055

1.207 ± 0.023

3.168 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski