Pelagicola litoralis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Pelagicola

Average proteome isoelectric point is 6.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3367 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4U7MRW7|A0A4U7MRW7_9RHOB Uncharacterized protein OS=Pelagicola litoralis OX=420403 GN=FAP39_17065 PE=4 SV=1
GG1 pKa = 6.82ATQQVTVPVTVTDD14 pKa = 3.6STGATDD20 pKa = 3.63TEE22 pKa = 4.24NLVITVTGTNDD33 pKa = 2.94GPAVSGPVTLPGGTEE48 pKa = 3.91DD49 pKa = 3.44TSVQITAAQLLEE61 pKa = 4.4HH62 pKa = 6.59ATDD65 pKa = 4.66ADD67 pKa = 3.76TGDD70 pKa = 3.55QLAVTGLTASHH81 pKa = 5.91GTITGDD87 pKa = 3.08AATGFTFTPDD97 pKa = 2.89ANYY100 pKa = 10.54NGPVSLSYY108 pKa = 10.47TVTDD112 pKa = 3.3GHH114 pKa = 6.54GGSVAQTASLTLGAVGDD131 pKa = 3.79PAIIGGVDD139 pKa = 3.05TGDD142 pKa = 3.37VTEE145 pKa = 4.84NKK147 pKa = 9.95AGQDD151 pKa = 3.45MSPDD155 pKa = 3.41YY156 pKa = 10.13AQPGMATLGRR166 pKa = 11.84AQLYY170 pKa = 10.83ADD172 pKa = 4.11GQLTILDD179 pKa = 4.57PDD181 pKa = 3.53TGEE184 pKa = 4.05NQFDD188 pKa = 3.9TRR190 pKa = 11.84GSMGMNYY197 pKa = 10.11SGTYY201 pKa = 10.01GDD203 pKa = 5.35LRR205 pKa = 11.84LNSDD209 pKa = 4.2GSWHH213 pKa = 6.26YY214 pKa = 11.19YY215 pKa = 9.58GDD217 pKa = 3.92AGHH220 pKa = 6.8IRR222 pKa = 11.84VTGGRR227 pKa = 11.84TTTRR231 pKa = 11.84GTAIDD236 pKa = 3.64QLGEE240 pKa = 4.22GQTLTDD246 pKa = 4.46TITVYY251 pKa = 11.07SKK253 pKa = 11.02DD254 pKa = 3.4GTAHH258 pKa = 7.58DD259 pKa = 3.75ITITIHH265 pKa = 6.11GSNDD269 pKa = 2.92RR270 pKa = 11.84PYY272 pKa = 10.65CSSEE276 pKa = 3.92VALTPGTEE284 pKa = 4.22DD285 pKa = 3.16TAQTLTKK292 pKa = 10.45AQLLANTVEE301 pKa = 4.01VDD303 pKa = 3.29ANDD306 pKa = 3.71AGKK309 pKa = 10.77LSIAGLRR316 pKa = 11.84ADD318 pKa = 4.1HH319 pKa = 7.17GSIRR323 pKa = 11.84DD324 pKa = 3.92NGDD327 pKa = 2.64GTYY330 pKa = 10.28TFTPARR336 pKa = 11.84DD337 pKa = 3.62YY338 pKa = 11.55NGAVHH343 pKa = 6.2FTYY346 pKa = 10.23DD347 pKa = 3.07VKK349 pKa = 10.92DD350 pKa = 3.26AHH352 pKa = 6.92GGVTHH357 pKa = 7.18TGATTTLAAVSDD369 pKa = 3.81AAIIGGTDD377 pKa = 2.98TGSATEE383 pKa = 3.87DD384 pKa = 3.46HH385 pKa = 5.47VTGRR389 pKa = 11.84IVISGLLTVSDD400 pKa = 4.52PDD402 pKa = 4.13GPSQEE407 pKa = 4.2HH408 pKa = 5.16FQYY411 pKa = 11.05SQFGEE416 pKa = 4.24HH417 pKa = 7.14AISDD421 pKa = 3.95PFGGNLHH428 pKa = 6.76IDD430 pKa = 3.73SAGSWSYY437 pKa = 9.36VTDD440 pKa = 3.5NSNPAVQQLAAGQEE454 pKa = 4.0GHH456 pKa = 5.06ATYY459 pKa = 10.36RR460 pKa = 11.84VRR462 pKa = 11.84SSDD465 pKa = 3.16GTTHH469 pKa = 6.83QIQITIHH476 pKa = 5.47GTNDD480 pKa = 3.23APVLSASTASATEE493 pKa = 4.6DD494 pKa = 3.72GQSVTGQVSGTDD506 pKa = 3.2VDD508 pKa = 3.74TGDD511 pKa = 3.66ALAYY515 pKa = 10.19SLGSAAPAGFTLNPDD530 pKa = 3.81GSWSFDD536 pKa = 3.69PADD539 pKa = 3.58AAYY542 pKa = 10.19QHH544 pKa = 6.84LAAGATQQVTVPVTVTDD561 pKa = 3.6STGATDD567 pKa = 3.59TQNLVITVTGTNDD580 pKa = 3.06GPTVSGPVTLPGGTEE595 pKa = 3.91DD596 pKa = 3.44TSVQITAAQLLAHH609 pKa = 6.49ATDD612 pKa = 4.02IDD614 pKa = 3.89TGDD617 pKa = 3.21TT618 pKa = 3.49

Molecular weight: 62.85 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4U7N8S8|A0A4U7N8S8_9RHOB ABC transporter ATP-binding protein OS=Pelagicola litoralis OX=420403 GN=FAP39_00465 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.44RR3 pKa = 11.84TYY5 pKa = 10.31QPSNLVRR12 pKa = 11.84KK13 pKa = 9.18RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37AGRR28 pKa = 11.84KK29 pKa = 8.54ILNARR34 pKa = 11.84RR35 pKa = 11.84AQGRR39 pKa = 11.84KK40 pKa = 9.34SLSAA44 pKa = 3.83

Molecular weight: 5.13 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3367

0

3367

1051415

8

2823

312.3

34.05

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.347 ± 0.052

0.931 ± 0.013

6.286 ± 0.042

5.626 ± 0.04

3.852 ± 0.023

8.323 ± 0.041

2.208 ± 0.02

5.403 ± 0.029

3.714 ± 0.033

9.757 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.941 ± 0.022

2.883 ± 0.023

4.799 ± 0.026

3.565 ± 0.024

6.043 ± 0.038

5.599 ± 0.028

5.657 ± 0.028

7.339 ± 0.033

1.389 ± 0.017

2.338 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski