Ranid herpesvirus 2

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Alloherpesviridae; Batrachovirus

Average proteome isoelectric point is 6.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 147 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q14W02|Q14W02_9VIRU ORF104 OS=Ranid herpesvirus 2 OX=389214 PE=4 SV=1
MM1 pKa = 7.09FVKK4 pKa = 9.61LTVVAIALACAVQRR18 pKa = 11.84HH19 pKa = 5.4AALVPSSNDD28 pKa = 3.02PEE30 pKa = 4.58KK31 pKa = 11.38YY32 pKa = 9.47IDD34 pKa = 3.64EE35 pKa = 5.1DD36 pKa = 4.94GYY38 pKa = 11.31GPTMLTKK45 pKa = 10.09FQIPQVPSFRR55 pKa = 11.84GTASPTEE62 pKa = 4.18DD63 pKa = 3.47EE64 pKa = 4.38EE65 pKa = 4.91EE66 pKa = 3.99EE67 pKa = 4.57VVVVEE72 pKa = 4.59RR73 pKa = 11.84VPPSAAAQEE82 pKa = 4.38EE83 pKa = 4.78EE84 pKa = 4.81TVAEE88 pKa = 4.35AATAEE93 pKa = 4.53TPTEE97 pKa = 4.33TVDD100 pKa = 3.46EE101 pKa = 4.95APTEE105 pKa = 4.12EE106 pKa = 4.49TPAEE110 pKa = 4.2AEE112 pKa = 4.14PTVLEE117 pKa = 4.43VPVDD121 pKa = 3.72TAEE124 pKa = 4.18TTTPAGVEE132 pKa = 4.2EE133 pKa = 4.31EE134 pKa = 5.03SITTTTPSPEE144 pKa = 3.97EE145 pKa = 4.06VEE147 pKa = 4.22RR148 pKa = 11.84TTLGVMLGLSILTTTGTTLSLVVEE172 pKa = 4.79EE173 pKa = 4.78PTNTTATPTTTTKK186 pKa = 10.78AVNTTPEE193 pKa = 4.23DD194 pKa = 3.79YY195 pKa = 10.62KK196 pKa = 11.51DD197 pKa = 3.59EE198 pKa = 5.42DD199 pKa = 3.75FDD201 pKa = 4.42EE202 pKa = 5.13YY203 pKa = 11.17EE204 pKa = 4.22SSDD207 pKa = 3.83TEE209 pKa = 4.02LHH211 pKa = 6.96DD212 pKa = 4.57RR213 pKa = 11.84LPTIGGYY220 pKa = 5.84TTPPRR225 pKa = 11.84STTASNTTVNGTSSKK240 pKa = 10.43PDD242 pKa = 3.24QKK244 pKa = 10.97PNQSNGSGPGSDD256 pKa = 3.19FGVYY260 pKa = 7.32VHH262 pKa = 6.96IFSKK266 pKa = 10.04ATAEE270 pKa = 5.51RR271 pKa = 11.84GPTWQAALLISVVFIMGVVFF291 pKa = 5.1

Molecular weight: 30.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q14VX4|Q14VX4_9VIRU ORF132 OS=Ranid herpesvirus 2 OX=389214 PE=4 SV=1
MM1 pKa = 7.61RR2 pKa = 11.84VLVLAAFLWAATGFNPRR19 pKa = 11.84VARR22 pKa = 11.84SADD25 pKa = 3.43FPLNDD30 pKa = 3.47QEE32 pKa = 4.22FARR35 pKa = 11.84VKK37 pKa = 10.55EE38 pKa = 3.83LLNRR42 pKa = 11.84NSVRR46 pKa = 11.84YY47 pKa = 9.51KK48 pKa = 10.17RR49 pKa = 11.84TDD51 pKa = 3.18GPPRR55 pKa = 11.84DD56 pKa = 3.73VDD58 pKa = 3.28ATFYY62 pKa = 10.91SVRR65 pKa = 11.84PPPAYY70 pKa = 8.7TAAFKK75 pKa = 10.53KK76 pKa = 10.12IYY78 pKa = 8.81TSRR81 pKa = 11.84SVRR84 pKa = 11.84SFCLRR89 pKa = 11.84DD90 pKa = 3.43YY91 pKa = 11.63VKK93 pKa = 10.98GKK95 pKa = 7.66TRR97 pKa = 11.84SVEE100 pKa = 3.71ASSCIFGLKK109 pKa = 9.63KK110 pKa = 10.33QLFLLRR116 pKa = 11.84STRR119 pKa = 11.84VQNITSEE126 pKa = 4.41PPCLEE131 pKa = 3.85VRR133 pKa = 11.84PVTSWGYY140 pKa = 10.53IYY142 pKa = 11.28VNALNQDD149 pKa = 3.74RR150 pKa = 11.84IKK152 pKa = 11.1INMGKK157 pKa = 9.29KK158 pKa = 9.55LQMMPCKK165 pKa = 10.0PRR167 pKa = 4.4

Molecular weight: 19.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

147

0

147

64480

75

3161

438.6

49.93

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.368 ± 0.137

2.765 ± 0.095

4.994 ± 0.114

6.664 ± 0.191

3.916 ± 0.101

4.254 ± 0.125

3.015 ± 0.083

4.15 ± 0.086

5.538 ± 0.155

10.14 ± 0.18

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.985 ± 0.09

4.045 ± 0.102

5.625 ± 0.275

3.725 ± 0.101

5.642 ± 0.112

6.368 ± 0.14

6.239 ± 0.131

6.914 ± 0.121

1.058 ± 0.049

4.595 ± 0.113
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski