Photobacterium damselae subsp. damselae CIP 102761

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium; Photobacterium damselae; Photobacterium damselae subsp. damselae

Average proteome isoelectric point is 6.2

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3498 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D0Z4Q9|D0Z4Q9_PHODD Inosine-uridine preferring nucleoside hydrolase OS=Photobacterium damselae subsp. damselae CIP 102761 OX=675817 GN=VDA_000517 PE=4 SV=1
MM1 pKa = 7.31NVFKK5 pKa = 11.07GIAKK9 pKa = 10.21VGITAVASISFAAMALTEE27 pKa = 4.39SGTVIKK33 pKa = 10.3NQAGATYY40 pKa = 9.91RR41 pKa = 11.84DD42 pKa = 3.47SANILRR48 pKa = 11.84STTSNLVEE56 pKa = 4.21TLVQPVAALTLINDD70 pKa = 3.68QSKK73 pKa = 10.8LGAPGRR79 pKa = 11.84TVTFNHH85 pKa = 5.99VLTNTGNSTDD95 pKa = 3.66SFALDD100 pKa = 3.4MVLPASVISSATIYY114 pKa = 10.49PDD116 pKa = 3.44TNNDD120 pKa = 2.91GVADD124 pKa = 4.41PGSTPIASGDD134 pKa = 3.64VVGPLAPGEE143 pKa = 4.19SFEE146 pKa = 4.27FVIVADD152 pKa = 4.2IDD154 pKa = 3.62PAATINSSNALTITATSQAVVVDD177 pKa = 4.86GVAVANGGVSAQTNTDD193 pKa = 3.0TVTATNLPIVEE204 pKa = 4.09ITKK207 pKa = 10.5ALSSSEE213 pKa = 4.07GASPSGPYY221 pKa = 9.1TVTFTYY227 pKa = 10.68TNVGLTDD234 pKa = 3.89MDD236 pKa = 4.33PLQTNGVILNDD247 pKa = 3.52VLPEE251 pKa = 3.81GMRR254 pKa = 11.84FNGAVSWSISGTTITASGTTTGGSEE279 pKa = 4.05TSGDD283 pKa = 3.15QDD285 pKa = 4.74LAFTTCIAPDD295 pKa = 4.01ASCPNNDD302 pKa = 3.58EE303 pKa = 4.22IQFVMDD309 pKa = 4.52GLASDD314 pKa = 4.65EE315 pKa = 4.29SATISFEE322 pKa = 4.24VNIDD326 pKa = 3.56SGLSATTLYY335 pKa = 11.01NQGTYY340 pKa = 10.98GFDD343 pKa = 3.45EE344 pKa = 5.2DD345 pKa = 4.25NSGTVDD351 pKa = 3.54VGEE354 pKa = 4.0QDD356 pKa = 3.12STNTNRR362 pKa = 11.84VPFLITSNYY371 pKa = 9.76AVIANNGGCDD381 pKa = 2.94VGTDD385 pKa = 3.88NNCDD389 pKa = 3.33GSDD392 pKa = 3.79DD393 pKa = 4.05TNHH396 pKa = 6.92EE397 pKa = 4.13IVDD400 pKa = 3.73IASASQGARR409 pKa = 11.84VSFTNYY415 pKa = 8.22IWNTGNDD422 pKa = 3.08EE423 pKa = 5.01DD424 pKa = 4.64IFNISIEE431 pKa = 4.22SSTFPSGTSFFLYY444 pKa = 10.26KK445 pKa = 10.15SDD447 pKa = 3.82GVTPLIDD454 pKa = 3.68TDD456 pKa = 3.7NDD458 pKa = 4.22SNPDD462 pKa = 3.35TGVIPAAGEE471 pKa = 4.09TCPSYY476 pKa = 11.15LVTDD480 pKa = 4.81GNLCGYY486 pKa = 10.1KK487 pKa = 9.96VVLVATLPASALGGPYY503 pKa = 10.12QITKK507 pKa = 10.21RR508 pKa = 11.84ATSSSDD514 pKa = 2.93TSKK517 pKa = 10.1TNTVIDD523 pKa = 3.74RR524 pKa = 11.84LGTITASTVDD534 pKa = 3.35LTNNFRR540 pKa = 11.84AEE542 pKa = 3.9TSLTVEE548 pKa = 4.85DD549 pKa = 4.39SCDD552 pKa = 3.72AADD555 pKa = 4.34DD556 pKa = 3.94NCGIGAGPEE565 pKa = 4.04ATPVTTNTTAPGTTTRR581 pKa = 11.84FTLYY585 pKa = 8.97VTNTSGAADD594 pKa = 3.86SYY596 pKa = 10.2EE597 pKa = 3.95LQYY600 pKa = 11.45SSTNFAEE607 pKa = 4.24NTMPADD613 pKa = 3.14WSVVFKK619 pKa = 10.96NAAGEE624 pKa = 4.36VITNIPVLGPDD635 pKa = 3.78DD636 pKa = 4.84AMLVYY641 pKa = 10.93ADD643 pKa = 3.4VTVPEE648 pKa = 4.3NATTATQDD656 pKa = 3.13VYY658 pKa = 11.22FKK660 pKa = 10.91VVSPTTGASDD670 pKa = 3.63IKK672 pKa = 10.59RR673 pKa = 11.84DD674 pKa = 3.47AVTIDD679 pKa = 3.73NSSQCLAFGPPNANGVTYY697 pKa = 10.58AGGSIVYY704 pKa = 9.34KK705 pKa = 10.52HH706 pKa = 6.25ILNNTSNDD714 pKa = 3.11AYY716 pKa = 10.04TNIALTVTNSDD727 pKa = 3.06SDD729 pKa = 3.86FSAVIYY735 pKa = 10.52EE736 pKa = 4.37DD737 pKa = 3.79TNGDD741 pKa = 3.84DD742 pKa = 3.98VLTGADD748 pKa = 3.48NSITSIASLAGGAQKK763 pKa = 11.08VLFVKK768 pKa = 10.47VLAPANASQGQDD780 pKa = 2.71NITTVEE786 pKa = 4.16TTVACGTLQIIDD798 pKa = 3.8TTTIANTNMKK808 pKa = 8.2VTKK811 pKa = 9.85EE812 pKa = 3.87QTPDD816 pKa = 3.26LDD818 pKa = 4.55CNGTSDD824 pKa = 3.28TGNFVTTNFAVAPGEE839 pKa = 4.19CIIYY843 pKa = 10.66RR844 pKa = 11.84LTTEE848 pKa = 4.57NIAIEE853 pKa = 4.37DD854 pKa = 3.67AHH856 pKa = 6.58NVTLTDD862 pKa = 3.32ATPAYY867 pKa = 6.73TTFNVTGGIPSITEE881 pKa = 3.66GTINTVINGTTGSIIGTVGTVAPGEE906 pKa = 4.32SEE908 pKa = 3.94TLIFGIRR915 pKa = 11.84IDD917 pKa = 3.57NN918 pKa = 3.72

Molecular weight: 94.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D0Z141|D0Z141_PHODD GDT1 family protein OS=Photobacterium damselae subsp. damselae CIP 102761 OX=675817 GN=VDA_003255 PE=3 SV=1
MM1 pKa = 7.69SKK3 pKa = 8.98RR4 pKa = 11.84TFQPSVLKK12 pKa = 10.49RR13 pKa = 11.84KK14 pKa = 7.97RR15 pKa = 11.84THH17 pKa = 5.89GFRR20 pKa = 11.84ARR22 pKa = 11.84MATKK26 pKa = 10.41NGRR29 pKa = 11.84AVINARR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 9.74GRR40 pKa = 11.84KK41 pKa = 8.91RR42 pKa = 11.84LSKK45 pKa = 10.84

Molecular weight: 5.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3498

0

3498

1276815

37

7833

365.0

40.61

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.464 ± 0.05

1.067 ± 0.017

5.63 ± 0.07

5.927 ± 0.041

4.041 ± 0.031

6.736 ± 0.062

2.311 ± 0.025

6.695 ± 0.034

5.343 ± 0.061

10.196 ± 0.059

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.613 ± 0.029

4.526 ± 0.04

3.985 ± 0.03

4.902 ± 0.042

4.386 ± 0.043

6.385 ± 0.039

5.623 ± 0.062

6.726 ± 0.043

1.24 ± 0.017

3.202 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski