Pandoravirus salinus

Taxonomy: Viruses; unclassified viruses; unclassified DNA viruses; unclassified dsDNA viruses; Pandoravirus

Average proteome isoelectric point is 6.81

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1430 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|S4W5M0|S4W5M0_9VIRU Uncharacterized protein OS=Pandoravirus salinus OX=1349410 GN=psal_cds_1295 PE=4 SV=1
MM1 pKa = 7.82AWLQQNGYY9 pKa = 8.45PPAWPLSDD17 pKa = 6.14DD18 pKa = 4.88DD19 pKa = 5.12DD20 pKa = 6.5CEE22 pKa = 4.02DD23 pKa = 4.43TIAHH27 pKa = 6.97RR28 pKa = 11.84DD29 pKa = 3.79DD30 pKa = 4.85PNDD33 pKa = 4.09PFDD36 pKa = 4.56SYY38 pKa = 11.78CDD40 pKa = 3.79DD41 pKa = 5.29AEE43 pKa = 5.4DD44 pKa = 5.34GPLDD48 pKa = 4.0GNASYY53 pKa = 10.81EE54 pKa = 3.97WGGCIDD60 pKa = 5.11DD61 pKa = 4.7GGFPYY66 pKa = 10.19EE67 pKa = 4.45VQDD70 pKa = 3.64AHH72 pKa = 6.78PPNAGVPYY80 pKa = 10.46AIDD83 pKa = 4.47DD84 pKa = 4.05DD85 pKa = 4.41VTVSGEE91 pKa = 3.99CLVAPEE97 pKa = 4.47HH98 pKa = 5.85TPYY101 pKa = 10.99AYY103 pKa = 10.15GYY105 pKa = 7.53TFIEE109 pKa = 4.79GFMPADD115 pKa = 3.45SFDD118 pKa = 3.74ALVRR122 pKa = 11.84PEE124 pKa = 3.89RR125 pKa = 11.84RR126 pKa = 11.84LVIMVDD132 pKa = 3.83GTPVALDD139 pKa = 3.28AAEE142 pKa = 4.06VEE144 pKa = 4.58RR145 pKa = 11.84AGKK148 pKa = 9.92VGRR151 pKa = 11.84ALVTPLGSCVLGPVDD166 pKa = 4.17VEE168 pKa = 4.32RR169 pKa = 11.84AHH171 pKa = 6.46EE172 pKa = 4.22ADD174 pKa = 3.67EE175 pKa = 4.55ALHH178 pKa = 6.8DD179 pKa = 4.21SEE181 pKa = 4.05GLRR184 pKa = 11.84RR185 pKa = 11.84FFTTAPVNAAIEE197 pKa = 4.16TAAPALGASAGAAADD212 pKa = 3.67VAGGSILSGVLGGLFAALLL231 pKa = 4.05

Molecular weight: 24.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|S4W5A6|S4W5A6_9VIRU Uncharacterized protein OS=Pandoravirus salinus OX=1349410 GN=psal_cds_1212 PE=4 SV=1
MM1 pKa = 7.62RR2 pKa = 11.84LEE4 pKa = 4.84GKK6 pKa = 7.35QQRR9 pKa = 11.84KK10 pKa = 6.62MKK12 pKa = 10.25RR13 pKa = 11.84KK14 pKa = 9.02RR15 pKa = 11.84KK16 pKa = 9.49KK17 pKa = 8.24EE18 pKa = 3.67RR19 pKa = 11.84HH20 pKa = 4.41RR21 pKa = 11.84QRR23 pKa = 11.84PRR25 pKa = 11.84SQGKK29 pKa = 8.88KK30 pKa = 9.09AAAKK34 pKa = 10.09RR35 pKa = 11.84GGSAARR41 pKa = 11.84RR42 pKa = 11.84VRR44 pKa = 11.84ATRR47 pKa = 11.84SAFAGRR53 pKa = 11.84AAKK56 pKa = 8.65WRR58 pKa = 11.84HH59 pKa = 5.23GMASWRR65 pKa = 11.84ATTRR69 pKa = 11.84TPAAPP74 pKa = 3.53

Molecular weight: 8.51 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1430

0

1430

549050

50

2342

384.0

41.53

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.251 ± 0.091

2.738 ± 0.038

7.65 ± 0.064

3.775 ± 0.037

2.313 ± 0.027

7.839 ± 0.065

3.03 ± 0.036

3.147 ± 0.025

2.118 ± 0.04

8.072 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.978 ± 0.02

2.067 ± 0.028

6.269 ± 0.061

2.594 ± 0.039

9.104 ± 0.069

5.843 ± 0.052

5.589 ± 0.053

7.379 ± 0.046

2.134 ± 0.035

2.111 ± 0.032
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski