Luteimonas granuli

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteimonas

Average proteome isoelectric point is 6.54

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2469 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A518N6G5|A0A518N6G5_9GAMM AMP-binding protein OS=Luteimonas granuli OX=1176533 GN=FPZ22_11900 PE=4 SV=1
MM1 pKa = 7.52NLNKK5 pKa = 10.23LAIAAALAITATGVQAADD23 pKa = 3.4TTGTFTVSTNVTASCEE39 pKa = 4.04VSATDD44 pKa = 5.42LVFTDD49 pKa = 4.09VDD51 pKa = 3.86PLANATTATDD61 pKa = 3.64GDD63 pKa = 4.09TTISVTCSNTTPYY76 pKa = 11.03NVGLSVGSGAGATVAARR93 pKa = 11.84KK94 pKa = 6.85MTHH97 pKa = 6.38TDD99 pKa = 2.95TTSTLDD105 pKa = 3.3YY106 pKa = 11.29ALFSDD111 pKa = 5.41AGRR114 pKa = 11.84TTDD117 pKa = 2.75WGHH120 pKa = 5.65TVSTDD125 pKa = 3.49TVPGTGTGVAQSLTVYY141 pKa = 10.21GQIASGQEE149 pKa = 3.87TAKK152 pKa = 10.74VGAYY156 pKa = 8.55TDD158 pKa = 4.3TITVTVTYY166 pKa = 10.89

Molecular weight: 16.68 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A518N2X1|A0A518N2X1_9GAMM AsmA family protein OS=Luteimonas granuli OX=1176533 GN=FPZ22_04590 PE=4 SV=1
MM1 pKa = 7.14ATKK4 pKa = 10.21KK5 pKa = 10.04VAKK8 pKa = 9.95KK9 pKa = 10.48KK10 pKa = 8.84PAKK13 pKa = 9.91KK14 pKa = 9.74AAKK17 pKa = 8.43KK18 pKa = 6.97TAKK21 pKa = 10.13KK22 pKa = 10.02AVRR25 pKa = 11.84KK26 pKa = 8.68AAPRR30 pKa = 11.84KK31 pKa = 8.14VAKK34 pKa = 10.45KK35 pKa = 10.09KK36 pKa = 8.97VAKK39 pKa = 10.07KK40 pKa = 9.63AAKK43 pKa = 9.58KK44 pKa = 8.97ATRR47 pKa = 11.84KK48 pKa = 8.43VAKK51 pKa = 9.83KK52 pKa = 10.08AAVKK56 pKa = 10.44KK57 pKa = 10.12AVKK60 pKa = 9.97KK61 pKa = 9.95AAKK64 pKa = 8.52KK65 pKa = 7.28TAKK68 pKa = 9.05KK69 pKa = 5.34TTKK72 pKa = 10.33KK73 pKa = 10.35AVKK76 pKa = 9.9KK77 pKa = 10.71AGAKK81 pKa = 8.28KK82 pKa = 7.86TAKK85 pKa = 10.35KK86 pKa = 8.98ATKK89 pKa = 9.77KK90 pKa = 9.51VAKK93 pKa = 9.84KK94 pKa = 10.45RR95 pKa = 11.84PAKK98 pKa = 10.05KK99 pKa = 9.97AAAKK103 pKa = 10.11KK104 pKa = 8.98ATAKK108 pKa = 9.12KK109 pKa = 7.44TAKK112 pKa = 10.14KK113 pKa = 10.01AVKK116 pKa = 9.72KK117 pKa = 10.86APAKK121 pKa = 10.15KK122 pKa = 9.75AAKK125 pKa = 8.57KK126 pKa = 7.18TAKK129 pKa = 10.16KK130 pKa = 8.93ATKK133 pKa = 8.78KK134 pKa = 8.92TVAKK138 pKa = 8.85KK139 pKa = 8.17TAAKK143 pKa = 8.63KK144 pKa = 8.15TATKK148 pKa = 8.98KK149 pKa = 8.71TATKK153 pKa = 10.1KK154 pKa = 9.45AAKK157 pKa = 9.64KK158 pKa = 9.41RR159 pKa = 11.84APRR162 pKa = 11.84KK163 pKa = 9.16AKK165 pKa = 10.44APVVSIPAAPAPLMM179 pKa = 4.49

Molecular weight: 18.77 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2469

0

2469

828099

41

2791

335.4

36.2

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.919 ± 0.079

0.82 ± 0.016

6.023 ± 0.041

5.619 ± 0.039

3.231 ± 0.031

9.285 ± 0.048

2.265 ± 0.023

3.862 ± 0.032

2.1 ± 0.039

10.733 ± 0.069

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.216 ± 0.022

2.063 ± 0.03

5.591 ± 0.04

2.996 ± 0.027

8.549 ± 0.052

4.819 ± 0.034

4.584 ± 0.031

7.743 ± 0.04

1.513 ± 0.02

2.068 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski