Torque teno midi virus 7

Taxonomy: Viruses; Anelloviridae; Gammatorquevirus

Average proteome isoelectric point is 7.77

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A7VLW4|A7VLW4_9VIRU Capsid protein OS=Torque teno midi virus 7 OX=2065048 PE=3 SV=1
MM1 pKa = 7.23QNISADD7 pKa = 3.25NFFRR11 pKa = 11.84PTHH14 pKa = 6.07FNQVTKK20 pKa = 9.71QQIWMQQIQDD30 pKa = 3.49SHH32 pKa = 8.93DD33 pKa = 4.26NICNCNSCFAHH44 pKa = 6.84LLANIFPPGHH54 pKa = 7.21KK55 pKa = 10.53DD56 pKa = 3.0RR57 pKa = 11.84DD58 pKa = 3.49LSINQILARR67 pKa = 11.84DD68 pKa = 4.22LNQPCHH74 pKa = 6.46SGGTEE79 pKa = 3.77EE80 pKa = 4.75EE81 pKa = 4.39RR82 pKa = 11.84TGGDD86 pKa = 3.06TNTRR90 pKa = 11.84PEE92 pKa = 4.02NTGAADD98 pKa = 4.1GPAEE102 pKa = 4.09EE103 pKa = 4.55GKK105 pKa = 10.14HH106 pKa = 5.38YY107 pKa = 10.85IEE109 pKa = 5.94DD110 pKa = 3.89ADD112 pKa = 4.09LQEE115 pKa = 5.28LIAAGEE121 pKa = 4.21DD122 pKa = 3.18ATGRR126 pKa = 3.71

Molecular weight: 13.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A7VLW4|A7VLW4_9VIRU Capsid protein OS=Torque teno midi virus 7 OX=2065048 PE=3 SV=1
MM1 pKa = 7.42PFWWNRR7 pKa = 11.84RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 8.8NWWGYY15 pKa = 9.13KK16 pKa = 9.6YY17 pKa = 9.34KK18 pKa = 9.43TRR20 pKa = 11.84KK21 pKa = 7.44YY22 pKa = 10.27RR23 pKa = 11.84RR24 pKa = 11.84RR25 pKa = 11.84RR26 pKa = 11.84WPRR29 pKa = 11.84RR30 pKa = 11.84RR31 pKa = 11.84RR32 pKa = 11.84QTLYY36 pKa = 10.02RR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84RR40 pKa = 11.84PTRR43 pKa = 11.84TNRR46 pKa = 11.84RR47 pKa = 11.84RR48 pKa = 11.84RR49 pKa = 11.84RR50 pKa = 11.84RR51 pKa = 11.84HH52 pKa = 5.39RR53 pKa = 11.84KK54 pKa = 8.26VKK56 pKa = 10.24RR57 pKa = 11.84KK58 pKa = 9.99RR59 pKa = 11.84KK60 pKa = 7.35TLTVKK65 pKa = 9.7QWQPEE70 pKa = 4.42SIRR73 pKa = 11.84KK74 pKa = 9.01CKK76 pKa = 10.32IIGLEE81 pKa = 3.97PQLLGAEE88 pKa = 5.26GSQIDD93 pKa = 4.55CFTVVKK99 pKa = 9.82TDD101 pKa = 3.43YY102 pKa = 11.19VPAKK106 pKa = 9.64LPWGGGFSLQNYY118 pKa = 5.72TLKK121 pKa = 10.81YY122 pKa = 10.03LYY124 pKa = 10.32SEE126 pKa = 4.27YY127 pKa = 10.18TYY129 pKa = 11.13HH130 pKa = 6.63NNIWTSSNNQKK141 pKa = 10.36DD142 pKa = 3.57LCRR145 pKa = 11.84YY146 pKa = 6.72TGGYY150 pKa = 9.07IKK152 pKa = 10.7LFRR155 pKa = 11.84HH156 pKa = 5.43EE157 pKa = 4.26TQDD160 pKa = 4.32FIISYY165 pKa = 10.02DD166 pKa = 3.58LQPPHH171 pKa = 6.93EE172 pKa = 4.29LSKK175 pKa = 10.58YY176 pKa = 6.97TFPSCHH182 pKa = 5.8PHH184 pKa = 6.82QMLLQKK190 pKa = 9.92RR191 pKa = 11.84HH192 pKa = 6.49KK193 pKa = 10.17ILLSKK198 pKa = 10.57QSNPNGKK205 pKa = 9.49LYY207 pKa = 10.9KK208 pKa = 9.94KK209 pKa = 10.32IKK211 pKa = 9.99FKK213 pKa = 10.69PPKK216 pKa = 10.3QMINKK221 pKa = 8.7WLFTKK226 pKa = 10.69NFTPASLIVLKK237 pKa = 9.58TAVCNFSHH245 pKa = 7.22ANLSGKK251 pKa = 7.89NQNMLVSLISLNLSFYY267 pKa = 11.0KK268 pKa = 10.71NPAWAQALTASGYY281 pKa = 10.41KK282 pKa = 10.07PYY284 pKa = 11.28DD285 pKa = 4.28NIPSDD290 pKa = 3.83LPFVVKK296 pKa = 10.05QANKK300 pKa = 9.79EE301 pKa = 4.01VQKK304 pKa = 11.05YY305 pKa = 6.92MKK307 pKa = 9.88PQATTDD313 pKa = 3.5YY314 pKa = 8.87STSISYY320 pKa = 11.0DD321 pKa = 3.59DD322 pKa = 3.99GWFGPLFLSAIKK334 pKa = 10.03IGKK337 pKa = 8.85IEE339 pKa = 4.13QATATHH345 pKa = 6.29QIIQARR351 pKa = 11.84YY352 pKa = 8.51NPNIDD357 pKa = 3.65SGVGNQIYY365 pKa = 9.93CASTHH370 pKa = 6.24AYY372 pKa = 9.33SWAPPSKK379 pKa = 10.43DD380 pKa = 3.04KK381 pKa = 11.16QLLIEE386 pKa = 5.86GMPLWLGLFGYY397 pKa = 10.33YY398 pKa = 10.4SFVRR402 pKa = 11.84SVKK405 pKa = 10.7SEE407 pKa = 4.32DD408 pKa = 3.18FMKK411 pKa = 10.94AHH413 pKa = 6.97VICIKK418 pKa = 10.82SPALYY423 pKa = 9.46CYY425 pKa = 10.13PEE427 pKa = 5.59IGSCDD432 pKa = 3.27TYY434 pKa = 11.79VFIDD438 pKa = 3.69PEE440 pKa = 4.7FISGKK445 pKa = 9.91RR446 pKa = 11.84PYY448 pKa = 9.33EE449 pKa = 3.77QLITSQQKK457 pKa = 9.76RR458 pKa = 11.84LWYY461 pKa = 9.79PDD463 pKa = 3.32MSWQKK468 pKa = 9.78KK469 pKa = 5.66TMNTLVEE476 pKa = 4.44AGPYY480 pKa = 8.93VPKK483 pKa = 10.9LSDD486 pKa = 3.15EE487 pKa = 4.42TFSNWEE493 pKa = 4.0LNSRR497 pKa = 11.84YY498 pKa = 9.67CFYY501 pKa = 10.79FKK503 pKa = 10.24WGGPYY508 pKa = 9.46TDD510 pKa = 4.47EE511 pKa = 4.76PEE513 pKa = 4.05IANPEE518 pKa = 4.09MLPTYY523 pKa = 9.69DD524 pKa = 4.99VPDD527 pKa = 4.06TVQKK531 pKa = 9.62TIQIVNPEE539 pKa = 4.12KK540 pKa = 10.44QSPEE544 pKa = 4.29TIIHH548 pKa = 5.73PWDD551 pKa = 3.47YY552 pKa = 11.04RR553 pKa = 11.84RR554 pKa = 11.84GLIKK558 pKa = 10.45EE559 pKa = 4.03KK560 pKa = 10.44ALKK563 pKa = 10.34RR564 pKa = 11.84MCSNISTDD572 pKa = 3.55TEE574 pKa = 4.15FQPVAEE580 pKa = 4.43TTPKK584 pKa = 10.28KK585 pKa = 10.33KK586 pKa = 9.8PRR588 pKa = 11.84LRR590 pKa = 11.84ATLPNPEE597 pKa = 4.78EE598 pKa = 4.18EE599 pKa = 4.28TQEE602 pKa = 4.08VQKK605 pKa = 11.01CLLSLCEE612 pKa = 3.64EE613 pKa = 4.03STYY616 pKa = 10.5QEE618 pKa = 4.17EE619 pKa = 4.84EE620 pKa = 4.08EE621 pKa = 4.72TNLQQLIKK629 pKa = 8.57QQKK632 pKa = 8.2YY633 pKa = 6.77QQQKK637 pKa = 9.66LKK639 pKa = 10.73YY640 pKa = 9.52NMVKK644 pKa = 10.62LLIDD648 pKa = 4.09LKK650 pKa = 10.13EE651 pKa = 4.03KK652 pKa = 10.59QRR654 pKa = 11.84ILQQQTGLLDD664 pKa = 3.39

Molecular weight: 78.41 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1321

126

664

330.3

38.0

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.602 ± 1.064

2.12 ± 0.232

4.542 ± 0.699

5.375 ± 0.396

3.709 ± 0.297

4.996 ± 0.591

2.801 ± 0.569

5.45 ± 0.402

8.478 ± 1.12

7.494 ± 0.7

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.665 ± 0.118

6.056 ± 0.714

6.813 ± 0.499

7.419 ± 0.765

5.753 ± 0.628

6.889 ± 1.162

6.813 ± 0.23

2.498 ± 0.644

1.817 ± 0.531

3.709 ± 1.331
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski