Luteimicrobium subarcticum

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Micrococcales incertae sedis; Luteimicrobium

Average proteome isoelectric point is 6.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3150 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2M8W727|A0A2M8W727_9MICO Putative PIG3 family NAD(P)H quinone oxidoreductase OS=Luteimicrobium subarcticum OX=620910 GN=CLV34_2658 PE=4 SV=1
MM1 pKa = 7.12LQADD5 pKa = 3.69GVMQEE10 pKa = 3.93RR11 pKa = 11.84NAVIVRR17 pKa = 11.84RR18 pKa = 11.84ALGLVAVTALVSSALVGCSRR38 pKa = 11.84GPDD41 pKa = 3.46AKK43 pKa = 10.08TLMHH47 pKa = 6.51NCVAYY52 pKa = 10.08HH53 pKa = 5.42YY54 pKa = 9.68DD55 pKa = 3.08GWGAEE60 pKa = 4.22AARR63 pKa = 11.84TVCQVEE69 pKa = 4.86FDD71 pKa = 4.14DD72 pKa = 4.18QPAYY76 pKa = 10.19SACKK80 pKa = 9.56YY81 pKa = 10.81AEE83 pKa = 4.62ADD85 pKa = 3.42PAIVDD90 pKa = 4.2RR91 pKa = 11.84EE92 pKa = 4.07AAANDD97 pKa = 4.42CDD99 pKa = 4.92AKK101 pKa = 10.74WIDD104 pKa = 4.19GGAATQGSAGGADD117 pKa = 3.66GASDD121 pKa = 4.39ADD123 pKa = 4.1DD124 pKa = 4.6DD125 pKa = 5.26ADD127 pKa = 4.18VAEE130 pKa = 5.19EE131 pKa = 4.09PQAPAPAPAASTDD144 pKa = 3.28TSADD148 pKa = 3.26AGDD151 pKa = 4.08APEE154 pKa = 5.06PPVADD159 pKa = 4.86DD160 pKa = 4.63EE161 pKa = 4.89GDD163 pKa = 3.7PMAVPAGGGVPTGVEE178 pKa = 4.14GVVQDD183 pKa = 4.87FLQATQGADD192 pKa = 2.82VDD194 pKa = 4.38LAIDD198 pKa = 3.53VLGAPGAGLSDD209 pKa = 3.24MFGTYY214 pKa = 9.91GGRR217 pKa = 11.84APYY220 pKa = 9.36TKK222 pKa = 10.49SLGCALGPDD231 pKa = 3.62GRR233 pKa = 11.84AYY235 pKa = 11.0LCDD238 pKa = 3.6VTNGTDD244 pKa = 3.47PLEE247 pKa = 3.99LVIASNADD255 pKa = 3.04HH256 pKa = 7.05AMWLLDD262 pKa = 3.56SLYY265 pKa = 11.08SADD268 pKa = 4.3PEE270 pKa = 4.22NN271 pKa = 3.64

Molecular weight: 27.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2M8WVZ6|A0A2M8WVZ6_9MICO Ribonuclease VapC OS=Luteimicrobium subarcticum OX=620910 GN=vapC PE=3 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.87KK16 pKa = 9.7HH17 pKa = 5.84RR18 pKa = 11.84KK19 pKa = 8.56LLRR22 pKa = 11.84KK23 pKa = 7.78TRR25 pKa = 11.84HH26 pKa = 3.65QRR28 pKa = 11.84RR29 pKa = 11.84NKK31 pKa = 9.78KK32 pKa = 9.85

Molecular weight: 4.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3150

0

3150

1102968

30

3286

350.1

37.02

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.192 ± 0.054

0.559 ± 0.013

6.878 ± 0.043

4.751 ± 0.049

2.536 ± 0.028

9.479 ± 0.039

2.104 ± 0.021

2.685 ± 0.037

1.695 ± 0.032

9.892 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.421 ± 0.017

1.532 ± 0.023

5.901 ± 0.036

2.587 ± 0.02

7.616 ± 0.066

5.353 ± 0.041

6.889 ± 0.072

10.498 ± 0.054

1.549 ± 0.018

1.883 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski