Cronobacter phage Dev-CD-23823

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Melnykvirinae; Cronosvirus; Cronobacter virus DevCD23823

Average proteome isoelectric point is 6.53

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 48 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0K8IWK8|A0A0K8IWK8_9CAUD Uncharacterized protein OS=Cronobacter phage Dev-CD-23823 OX=1712539 GN=gp23 PE=4 SV=1
MM1 pKa = 7.96DD2 pKa = 4.48MKK4 pKa = 11.08NVIDD8 pKa = 4.61ILRR11 pKa = 11.84EE12 pKa = 3.91HH13 pKa = 6.41NPEE16 pKa = 3.68LKK18 pKa = 10.7LRR20 pKa = 11.84VGEE23 pKa = 3.99LMQDD27 pKa = 3.24IAEE30 pKa = 4.21QMCGSVNCVGIHH42 pKa = 7.19CDD44 pKa = 3.2DD45 pKa = 5.53CPFQRR50 pKa = 11.84QNDD53 pKa = 3.87PDD55 pKa = 3.98DD56 pKa = 4.01AVAVMGSMIEE66 pKa = 3.86EE67 pKa = 4.57MYY69 pKa = 11.19

Molecular weight: 7.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0K8IXB5|A0A0K8IXB5_9CAUD DNA-directed RNA polymerase OS=Cronobacter phage Dev-CD-23823 OX=1712539 GN=gp29 PE=3 SV=1
MM1 pKa = 7.8RR2 pKa = 11.84KK3 pKa = 8.32LTRR6 pKa = 11.84SQAATLAAKK15 pKa = 8.66MVRR18 pKa = 11.84EE19 pKa = 4.13STGCPLCQRR28 pKa = 11.84TWAEE32 pKa = 4.02VQKK35 pKa = 10.88DD36 pKa = 4.05AEE38 pKa = 4.57DD39 pKa = 3.34KK40 pKa = 11.08AAAKK44 pKa = 10.02GKK46 pKa = 10.06KK47 pKa = 9.07LRR49 pKa = 11.84QAPYY53 pKa = 11.05VLDD56 pKa = 4.21HH57 pKa = 6.96DD58 pKa = 5.12HH59 pKa = 7.36NSGRR63 pKa = 11.84CRR65 pKa = 11.84GVLCRR70 pKa = 11.84GCNGAEE76 pKa = 3.73GKK78 pKa = 9.63VANAVSAWGKK88 pKa = 7.69TGKK91 pKa = 10.14EE92 pKa = 3.67YY93 pKa = 10.96AAILGWLQRR102 pKa = 11.84MVAYY106 pKa = 9.67LQQEE110 pKa = 4.25PTEE113 pKa = 4.5YY114 pKa = 9.87IYY116 pKa = 8.46PTHH119 pKa = 7.79VMADD123 pKa = 3.74EE124 pKa = 4.52KK125 pKa = 11.02KK126 pKa = 10.47KK127 pKa = 10.93SAGQLRR133 pKa = 11.84RR134 pKa = 11.84QAAQAKK140 pKa = 8.47VRR142 pKa = 11.84ARR144 pKa = 11.84RR145 pKa = 11.84KK146 pKa = 9.78QIADD150 pKa = 3.3KK151 pKa = 10.71RR152 pKa = 11.84GKK154 pKa = 9.94

Molecular weight: 17.13 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

48

0

48

12996

38

1260

270.8

30.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.303 ± 0.493

0.993 ± 0.148

6.24 ± 0.202

6.448 ± 0.339

3.447 ± 0.159

7.579 ± 0.306

1.862 ± 0.159

4.825 ± 0.274

6.179 ± 0.336

8.133 ± 0.359

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.032 ± 0.203

4.209 ± 0.263

3.932 ± 0.198

4.748 ± 0.437

5.586 ± 0.179

5.155 ± 0.219

5.54 ± 0.296

6.679 ± 0.322

1.485 ± 0.103

3.624 ± 0.218
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski