Inhella crocodyli

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiales genera incertae sedis; Inhella

Average proteome isoelectric point is 7.1

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3430 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3S2URV5|A0A3S2URV5_9BURK Uncharacterized protein OS=Inhella crocodyli OX=2499851 GN=EOD73_15270 PE=4 SV=1
DDD2 pKa = 4.01AVVTGVATGSVTEEE16 pKa = 5.08DD17 pKa = 3.39TVLASGTLIVSDDD30 pKa = 3.85DDD32 pKa = 3.63ATTVVPGSVAGTYYY46 pKa = 11.19DDD48 pKa = 3.76TINAAGQWTYYY59 pKa = 7.64LRR61 pKa = 11.84NGAANVQALTSADDD75 pKa = 3.7HH76 pKa = 6.29VEEE79 pKa = 4.34FTVTT

Molecular weight: 8.32 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A437LHS8|A0A437LHS8_9BURK Cytochrome P450 OS=Inhella crocodyli OX=2499851 GN=EOD73_12575 PE=3 SV=1
MM1 pKa = 7.31KK2 pKa = 9.39RR3 pKa = 11.84TYY5 pKa = 10.12QGSKK9 pKa = 7.18VRR11 pKa = 11.84RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 5.65GFLVRR21 pKa = 11.84MKK23 pKa = 10.53SRR25 pKa = 11.84GGRR28 pKa = 11.84AVLAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.87GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.04 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3430

0

3430

1173898

37

3140

342.2

37.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.969 ± 0.066

0.856 ± 0.013

5.241 ± 0.028

5.106 ± 0.037

3.191 ± 0.024

8.462 ± 0.035

2.357 ± 0.025

3.192 ± 0.031

2.814 ± 0.035

11.679 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.136 ± 0.018

2.264 ± 0.031

5.768 ± 0.04

4.487 ± 0.027

7.46 ± 0.047

4.857 ± 0.036

4.85 ± 0.046

7.631 ± 0.031

1.831 ± 0.024

1.85 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski