Weizmannia ginsengihum

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Bacillaceae; Weizmannia

Average proteome isoelectric point is 6.56

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2914 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0A6Y1J2|A0A0A6Y1J2_9BACI Ribosome biogenesis GTPase A OS=Weizmannia ginsengihum OX=363870 GN=ylqF PE=3 SV=1
MM1 pKa = 7.64AKK3 pKa = 8.8YY4 pKa = 9.02TIVDD8 pKa = 3.75RR9 pKa = 11.84EE10 pKa = 4.13TCIACGSCEE19 pKa = 3.87AVAPDD24 pKa = 3.37IYY26 pKa = 10.91GYY28 pKa = 10.69DD29 pKa = 3.54DD30 pKa = 3.73EE31 pKa = 6.65GISFVLLDD39 pKa = 4.27DD40 pKa = 4.37NKK42 pKa = 10.05GTEE45 pKa = 4.0AVPDD49 pKa = 3.86EE50 pKa = 5.23FIDD53 pKa = 5.01DD54 pKa = 3.52IVDD57 pKa = 3.49AFEE60 pKa = 4.72GCPSEE65 pKa = 4.46SIKK68 pKa = 10.85IADD71 pKa = 4.15RR72 pKa = 11.84PFNGNPHH79 pKa = 6.48AFEE82 pKa = 4.26

Molecular weight: 8.94 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0A6VEN8|A0A0A6VEN8_9BACI Ribonuclease M5 OS=Weizmannia ginsengihum OX=363870 GN=rnmV PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.42RR3 pKa = 11.84TYY5 pKa = 10.34QPNKK9 pKa = 8.21RR10 pKa = 11.84KK11 pKa = 9.62RR12 pKa = 11.84SKK14 pKa = 9.83VHH16 pKa = 5.77GFRR19 pKa = 11.84ARR21 pKa = 11.84MSTKK25 pKa = 10.19NGRR28 pKa = 11.84KK29 pKa = 8.86VLASRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 8.73GRR39 pKa = 11.84KK40 pKa = 8.76VLSAA44 pKa = 4.05

Molecular weight: 5.23 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2914

0

2914

806891

26

2386

276.9

31.11

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.042 ± 0.048

0.814 ± 0.012

4.921 ± 0.039

7.049 ± 0.062

4.434 ± 0.037

6.747 ± 0.043

2.361 ± 0.021

8.483 ± 0.044

7.108 ± 0.047

9.604 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.741 ± 0.019

4.486 ± 0.03

3.544 ± 0.027

3.981 ± 0.035

3.988 ± 0.03

5.91 ± 0.037

5.394 ± 0.031

6.91 ± 0.037

1.001 ± 0.018

3.485 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski