Peach associated luteovirus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Luteoviridae; unclassified Luteoviridae

Average proteome isoelectric point is 7.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1Z1G759|A0A1Z1G759_9LUTE Movement protein OS=Peach associated luteovirus OX=2006498 GN=ORF4 PE=4 SV=1
MM1 pKa = 7.47IVNLTQGAHH10 pKa = 6.21LALPGGSYY18 pKa = 10.76SSWLLSQISDD28 pKa = 3.7CGFTEE33 pKa = 4.8ACCAITTCGAYY44 pKa = 8.89TPHH47 pKa = 7.28WLL49 pKa = 4.03

Molecular weight: 5.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1Z1G758|A0A1Z1G758_9LUTE Isoform of A0A1Z1G754 Coat protein OS=Peach associated luteovirus OX=2006498 GN=ORF3 PE=4 SV=1
MM1 pKa = 7.05PTKK4 pKa = 10.25KK5 pKa = 10.68GKK7 pKa = 10.82GKK9 pKa = 10.43GKK11 pKa = 10.11KK12 pKa = 9.19GKK14 pKa = 10.46KK15 pKa = 8.96NGKK18 pKa = 9.04GGNSGANAKK27 pKa = 10.14SVVVNVQSGGRR38 pKa = 11.84GRR40 pKa = 11.84TGRR43 pKa = 11.84SASGGNRR50 pKa = 11.84VAGSGPGDD58 pKa = 3.37HH59 pKa = 7.12SNRR62 pKa = 11.84FSFTVDD68 pKa = 3.51DD69 pKa = 4.9LNSASSGILKK79 pKa = 9.99FGPNLSQYY87 pKa = 10.07TNFSNGILKK96 pKa = 10.33SFHH99 pKa = 6.61EE100 pKa = 4.24YY101 pKa = 10.62KK102 pKa = 9.4ITNLTVKK109 pKa = 9.48YY110 pKa = 10.31VSYY113 pKa = 11.06ASSTTSGAFAIEE125 pKa = 4.05IDD127 pKa = 3.85TSRR130 pKa = 11.84KK131 pKa = 7.13QTDD134 pKa = 3.5LKK136 pKa = 11.16SRR138 pKa = 11.84IISFPVSKK146 pKa = 10.48GFSRR150 pKa = 11.84GFQARR155 pKa = 11.84VLRR158 pKa = 11.84GLLWHH163 pKa = 6.63PTSEE167 pKa = 4.16DD168 pKa = 3.67QFWLVYY174 pKa = 10.01KK175 pKa = 10.98GNGKK179 pKa = 8.5STDD182 pKa = 3.0IAGQFVISFNVNFQGPCC199 pKa = 3.06

Molecular weight: 21.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

2

8

2454

49

890

306.8

34.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.031 ± 0.457

1.711 ± 0.393

5.786 ± 0.582

5.216 ± 0.692

4.686 ± 0.486

6.724 ± 1.351

1.997 ± 0.295

4.849 ± 0.282

6.724 ± 0.609

7.865 ± 0.889

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.812 ± 0.574

4.401 ± 0.645

5.338 ± 0.702

4.645 ± 0.243

5.542 ± 0.365

8.517 ± 1.324

4.808 ± 0.8

8.191 ± 0.819

1.385 ± 0.187

2.73 ± 0.278
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski