Marinobacter sp. Z-F4-2

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter; unclassified Marinobacter

Average proteome isoelectric point is 6.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2568 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2T4DBT8|A0A2T4DBT8_9ALTE Fatty acid-binding protein DegV (Fragment) OS=Marinobacter sp. Z-F4-2 OX=2137199 GN=C9993_12540 PE=4 SV=1
MM1 pKa = 7.74SDD3 pKa = 3.39FRR5 pKa = 11.84EE6 pKa = 4.16EE7 pKa = 5.22LEE9 pKa = 4.34GCQGNKK15 pKa = 10.18SLILGNGFGISYY27 pKa = 10.45DD28 pKa = 3.35VAARR32 pKa = 11.84TDD34 pKa = 3.76SFCWDD39 pKa = 3.79SLADD43 pKa = 4.67LCDD46 pKa = 4.09FDD48 pKa = 5.34NDD50 pKa = 3.71NPLLEE55 pKa = 5.0LLEE58 pKa = 4.24EE59 pKa = 4.62CNFDD63 pKa = 4.91FEE65 pKa = 5.41IVHH68 pKa = 5.8QKK70 pKa = 9.83INNAISVII78 pKa = 3.82

Molecular weight: 8.78 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2T4E0F0|A0A2T4E0F0_9ALTE Acyl-coenzyme A dehydrogenase OS=Marinobacter sp. Z-F4-2 OX=2137199 GN=C9993_02600 PE=3 SV=1
MM1 pKa = 7.24SRR3 pKa = 11.84RR4 pKa = 11.84RR5 pKa = 11.84KK6 pKa = 9.74YY7 pKa = 9.74SPEE10 pKa = 3.78FKK12 pKa = 10.41RR13 pKa = 11.84EE14 pKa = 3.99AIALTRR20 pKa = 11.84QPGVSCRR27 pKa = 11.84QVALEE32 pKa = 4.24IGINPNLLSRR42 pKa = 11.84WRR44 pKa = 11.84RR45 pKa = 11.84EE46 pKa = 3.64ADD48 pKa = 3.35EE49 pKa = 4.4EE50 pKa = 4.06TDD52 pKa = 3.55KK53 pKa = 11.54AFKK56 pKa = 10.81GSGSPRR62 pKa = 11.84DD63 pKa = 3.6EE64 pKa = 3.44EE65 pKa = 4.31VARR68 pKa = 11.84LKK70 pKa = 10.99RR71 pKa = 11.84EE72 pKa = 3.69LARR75 pKa = 11.84VKK77 pKa = 10.55KK78 pKa = 10.29EE79 pKa = 3.49RR80 pKa = 11.84GFFARR85 pKa = 11.84SGSVLRR91 pKa = 11.84KK92 pKa = 9.88GVVLRR97 pKa = 11.84YY98 pKa = 9.18QAIQRR103 pKa = 11.84CRR105 pKa = 11.84NTFPIRR111 pKa = 11.84LMCRR115 pKa = 11.84CLKK118 pKa = 10.57VSASGYY124 pKa = 7.0YY125 pKa = 9.83AWVSRR130 pKa = 11.84PEE132 pKa = 4.12SARR135 pKa = 11.84SKK137 pKa = 11.05ANQHH141 pKa = 5.5LLSRR145 pKa = 11.84IRR147 pKa = 11.84EE148 pKa = 3.94IHH150 pKa = 7.05DD151 pKa = 4.18DD152 pKa = 3.73SGGMIGSPRR161 pKa = 11.84MHH163 pKa = 7.24EE164 pKa = 4.12DD165 pKa = 3.22LVAEE169 pKa = 4.6GASTSLNRR177 pKa = 11.84VARR180 pKa = 11.84LMAKK184 pKa = 10.01HH185 pKa = 6.92GIQGWPRR192 pKa = 11.84KK193 pKa = 9.58KK194 pKa = 10.05RR195 pKa = 11.84GRR197 pKa = 11.84LGRR200 pKa = 11.84QSYY203 pKa = 9.62RR204 pKa = 11.84PPGIRR209 pKa = 11.84NHH211 pKa = 6.25LEE213 pKa = 3.62RR214 pKa = 11.84DD215 pKa = 4.45FSALEE220 pKa = 4.44PDD222 pKa = 4.25TKK224 pKa = 10.22WVTDD228 pKa = 3.18ITEE231 pKa = 4.07IPTQEE236 pKa = 3.94GKK238 pKa = 10.91LFLCVVLDD246 pKa = 4.41LFSKK250 pKa = 10.8LIVGWSMHH258 pKa = 5.4HH259 pKa = 5.74RR260 pKa = 11.84QDD262 pKa = 2.6RR263 pKa = 11.84HH264 pKa = 3.58MVIRR268 pKa = 11.84AVEE271 pKa = 3.81MAVWQRR277 pKa = 11.84QGKK280 pKa = 9.2VPVILHH286 pKa = 6.05SDD288 pKa = 3.38RR289 pKa = 11.84GSQFTSGDD297 pKa = 3.41YY298 pKa = 10.36QRR300 pKa = 11.84YY301 pKa = 8.95LGSNRR306 pKa = 11.84LVSSMSAVGHH316 pKa = 6.43CGDD319 pKa = 3.77NAACEE324 pKa = 4.52GFFGMLKK331 pKa = 9.98RR332 pKa = 11.84EE333 pKa = 4.44RR334 pKa = 11.84IHH336 pKa = 5.73HH337 pKa = 5.51RR338 pKa = 11.84RR339 pKa = 11.84YY340 pKa = 8.89RR341 pKa = 11.84TQNEE345 pKa = 3.11ARR347 pKa = 11.84ADD349 pKa = 3.49VFDD352 pKa = 4.63YY353 pKa = 10.82IEE355 pKa = 4.7RR356 pKa = 11.84FHH358 pKa = 6.55NPRR361 pKa = 11.84MRR363 pKa = 11.84RR364 pKa = 11.84RR365 pKa = 11.84VAAQDD370 pKa = 3.12RR371 pKa = 11.84KK372 pKa = 10.57LFAVLKK378 pKa = 9.91PSVEE382 pKa = 4.31TGG384 pKa = 2.95

Molecular weight: 44.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2568

0

2568

642497

20

1734

250.2

27.75

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.519 ± 0.062

0.96 ± 0.016

5.781 ± 0.037

6.833 ± 0.052

3.945 ± 0.035

7.523 ± 0.05

2.197 ± 0.029

5.298 ± 0.037

4.082 ± 0.055

10.558 ± 0.059

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.475 ± 0.029

3.395 ± 0.033

4.511 ± 0.034

4.017 ± 0.043

6.477 ± 0.047

6.156 ± 0.039

5.064 ± 0.028

7.081 ± 0.047

1.427 ± 0.02

2.7 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski