Pseudoglutamicibacter albus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group;

Average proteome isoelectric point is 6.02

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1813 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2I1J8L4|A0A2I1J8L4_9MICC ABC transporter ATP-binding protein OS=Pseudoglutamicibacter albus OX=98671 GN=CJ193_03140 PE=4 SV=1
MM1 pKa = 7.79SDD3 pKa = 2.88VKK5 pKa = 11.25KK6 pKa = 10.44NLRR9 pKa = 11.84YY10 pKa = 9.44SAEE13 pKa = 4.25HH14 pKa = 6.17EE15 pKa = 4.34WVDD18 pKa = 3.64DD19 pKa = 4.15SNPVKK24 pKa = 10.94VGISQVAADD33 pKa = 3.85ALGDD37 pKa = 3.73VVYY40 pKa = 11.25VDD42 pKa = 4.38LPEE45 pKa = 5.44AGSEE49 pKa = 4.14VTAGEE54 pKa = 4.19TCGEE58 pKa = 4.21VEE60 pKa = 4.36STKK63 pKa = 10.75SVSDD67 pKa = 3.7LYY69 pKa = 11.43APVSGTIVEE78 pKa = 4.26INQAVIDD85 pKa = 5.06DD86 pKa = 4.31PALLNSDD93 pKa = 4.14PYY95 pKa = 11.33GEE97 pKa = 4.43GWLFTVEE104 pKa = 4.15VTSEE108 pKa = 4.34GEE110 pKa = 3.91LLSAEE115 pKa = 5.08DD116 pKa = 3.76YY117 pKa = 11.46ASANGGNLVV126 pKa = 3.42

Molecular weight: 13.25 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2I1J9P1|A0A2I1J9P1_9MICC Thiamine-phosphate synthase OS=Pseudoglutamicibacter albus OX=98671 GN=thiE PE=3 SV=1
MM1 pKa = 7.51TKK3 pKa = 9.09RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84SKK15 pKa = 10.39KK16 pKa = 9.03HH17 pKa = 4.36GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILSTRR35 pKa = 11.84RR36 pKa = 11.84NKK38 pKa = 9.43GRR40 pKa = 11.84KK41 pKa = 8.9SLSAA45 pKa = 3.86

Molecular weight: 5.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1813

0

1813

615517

32

1666

339.5

36.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.103 ± 0.079

0.573 ± 0.016

5.941 ± 0.05

6.683 ± 0.06

3.105 ± 0.038

8.432 ± 0.045

2.172 ± 0.028

4.706 ± 0.039

3.422 ± 0.049

9.313 ± 0.059

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.224 ± 0.021

2.695 ± 0.03

5.125 ± 0.042

3.414 ± 0.032

6.426 ± 0.053

5.763 ± 0.037

5.999 ± 0.048

8.445 ± 0.062

1.389 ± 0.02

2.07 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski