Aliifodinibius sediminis

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Balneolaeota; Balneolia; Balneolales; Balneolaceae; Aliifodinibius

Average proteome isoelectric point is 5.97

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3822 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A521B7J8|A0A521B7J8_9BACT Uncharacterized protein OS=Aliifodinibius sediminis OX=1214077 GN=SAMN06265218_102263 PE=4 SV=1
MM1 pKa = 7.32QSIVNNRR8 pKa = 11.84FCLLPVILLISSLALTSCLDD28 pKa = 3.2SSTDD32 pKa = 3.53TNQGASKK39 pKa = 10.79NLLEE43 pKa = 4.26QAQSYY48 pKa = 11.42ADD50 pKa = 3.71FDD52 pKa = 4.27TFVDD56 pKa = 4.73IISDD60 pKa = 3.91TEE62 pKa = 4.42LNTTIANEE70 pKa = 4.51GPLTLLVPTNDD81 pKa = 4.11AFDD84 pKa = 4.6ALPSGTLEE92 pKa = 4.34SLTDD96 pKa = 3.52EE97 pKa = 4.08QLIDD101 pKa = 3.21ILSYY105 pKa = 10.79HH106 pKa = 6.82VIEE109 pKa = 5.59QIIDD113 pKa = 3.78LNQLSAEE120 pKa = 4.18EE121 pKa = 5.03TFTSMQGDD129 pKa = 3.6NIFFVISNDD138 pKa = 3.01SLYY141 pKa = 10.49INGSNYY147 pKa = 10.08VGGVGASNGVLYY159 pKa = 9.01ATDD162 pKa = 3.27QVLFPDD168 pKa = 4.78AYY170 pKa = 11.24LDD172 pKa = 3.75VTGLVHH178 pKa = 7.42KK179 pKa = 10.44RR180 pKa = 11.84KK181 pKa = 9.35QLSEE185 pKa = 4.05LDD187 pKa = 3.55KK188 pKa = 11.54SIDD191 pKa = 3.6NTGLASTLEE200 pKa = 4.48DD201 pKa = 3.05TSSAYY206 pKa = 9.75TIFAPSNTALQNAEE220 pKa = 4.39LSADD224 pKa = 3.5TLKK227 pKa = 10.98YY228 pKa = 10.24HH229 pKa = 5.65VVSGKK234 pKa = 10.21LLSQDD239 pKa = 3.62FSSSQTYY246 pKa = 6.76TTLNGKK252 pKa = 8.02EE253 pKa = 4.06LSVEE257 pKa = 4.11VSGSSVTINGEE268 pKa = 4.06AAVTTADD275 pKa = 3.22IEE277 pKa = 4.61GVNGVVHH284 pKa = 7.33IIDD287 pKa = 3.66TALAPPSEE295 pKa = 4.32

Molecular weight: 31.45 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A521B8R2|A0A521B8R2_9BACT Uncharacterized protein OS=Aliifodinibius sediminis OX=1214077 GN=SAMN06265218_102270 PE=4 SV=1
MM1 pKa = 8.07GDD3 pKa = 3.29QLSNNGIRR11 pKa = 11.84SQGKK15 pKa = 6.87VHH17 pKa = 6.84PLYY20 pKa = 10.87FLGLTSAVAILFVLNLSLGSVSIPFPEE47 pKa = 4.98LLDD50 pKa = 3.26ILMGGEE56 pKa = 4.16AGNTAWEE63 pKa = 4.46KK64 pKa = 10.23IVINIRR70 pKa = 11.84LPRR73 pKa = 11.84AATAVMAGSALAVSGLLMQTLFRR96 pKa = 11.84NPLAGPSVLGITAGASLGVAVVMLAAGSITTVFAIRR132 pKa = 11.84QLSVLGSGVIILAASVGSAVVLLLILLISLKK163 pKa = 10.42VRR165 pKa = 11.84DD166 pKa = 4.9NITLLIIGLMVGNMTIALVSIWQYY190 pKa = 9.99FSRR193 pKa = 11.84PEE195 pKa = 3.85QIQDD199 pKa = 3.36YY200 pKa = 9.66LIWTFGSLGGVSLGQLWVLGVVTVAGGGIAMVLSKK235 pKa = 10.43PLNGLLLGKK244 pKa = 10.22NYY246 pKa = 9.59ARR248 pKa = 11.84SMGIPVSRR256 pKa = 11.84ARR258 pKa = 11.84LWIIISTSLLAGGITAFCGPIGFVGIAVPHH288 pKa = 6.0LTRR291 pKa = 11.84SLLGTNEE298 pKa = 3.79HH299 pKa = 6.57RR300 pKa = 11.84VLIPGTLLMGALLLLACDD318 pKa = 5.51IIAQMPGSTITLPISAVTSMIGSPVVIWVIIRR350 pKa = 11.84RR351 pKa = 11.84KK352 pKa = 8.56NLKK355 pKa = 9.99AAFF358 pKa = 3.96

Molecular weight: 37.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3822

0

3822

1296162

27

2887

339.1

38.11

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.291 ± 0.042

0.674 ± 0.012

5.919 ± 0.034

7.346 ± 0.046

4.377 ± 0.03

7.355 ± 0.034

2.184 ± 0.021

6.565 ± 0.036

5.136 ± 0.042

9.492 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.471 ± 0.02

4.366 ± 0.029

4.198 ± 0.024

4.068 ± 0.028

5.374 ± 0.028

6.497 ± 0.029

5.33 ± 0.025

6.321 ± 0.027

1.346 ± 0.015

3.694 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski