Synechococcus phage ACG-2014c

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Acionnavirus; unclassified Acionnavirus

Average proteome isoelectric point is 5.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 225 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|H8ZMG6|H8ZMG6_9CAUD Uncharacterized protein OS=Synechococcus phage ACG-2014c OX=1079998 GN=Syn7803C43_59 PE=4 SV=1
MM1 pKa = 7.8NYY3 pKa = 8.67TLKK6 pKa = 10.5QLQDD10 pKa = 3.5RR11 pKa = 11.84VSSMIKK17 pKa = 9.92EE18 pKa = 4.01QGEE21 pKa = 4.25DD22 pKa = 3.62AEE24 pKa = 4.52CAAWIYY30 pKa = 9.2TKK32 pKa = 10.79NDD34 pKa = 2.97CHH36 pKa = 7.97LKK38 pKa = 10.75DD39 pKa = 4.03EE40 pKa = 4.77NGEE43 pKa = 3.67TDD45 pKa = 3.45YY46 pKa = 11.61QNNVEE51 pKa = 4.44DD52 pKa = 4.67PEE54 pKa = 4.24VLARR58 pKa = 11.84IFDD61 pKa = 4.0DD62 pKa = 4.01VGNIDD67 pKa = 4.07YY68 pKa = 9.95IYY70 pKa = 10.8EE71 pKa = 4.31VIQDD75 pKa = 3.76AVDD78 pKa = 3.51EE79 pKa = 4.48VTEE82 pKa = 4.15EE83 pKa = 4.24QLVQYY88 pKa = 8.37QQEE91 pKa = 4.23LVEE94 pKa = 4.68VKK96 pKa = 10.58

Molecular weight: 11.22 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|H8ZMU3|H8ZMU3_9CAUD TalC transaldolase-like protein OS=Synechococcus phage ACG-2014c OX=1079998 GN=Syn7803C43_179 PE=4 SV=1
MM1 pKa = 6.85NTLTIIKK8 pKa = 10.34NKK10 pKa = 9.4IEE12 pKa = 3.96KK13 pKa = 10.03AARR16 pKa = 11.84LHH18 pKa = 6.55DD19 pKa = 4.17AQILMTTYY27 pKa = 10.37RR28 pKa = 11.84GVKK31 pKa = 6.91YY32 pKa = 9.08TCDD35 pKa = 3.19HH36 pKa = 6.74SGDD39 pKa = 4.09SVHH42 pKa = 6.61GTFCYY47 pKa = 9.9RR48 pKa = 11.84GRR50 pKa = 11.84TYY52 pKa = 11.14KK53 pKa = 10.63KK54 pKa = 10.25

Molecular weight: 6.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

225

0

225

55948

35

7022

248.7

27.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.822 ± 0.189

0.965 ± 0.107

6.874 ± 0.141

5.979 ± 0.243

4.408 ± 0.089

7.918 ± 0.318

1.362 ± 0.117

6.604 ± 0.237

5.791 ± 0.424

7.067 ± 0.148

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.102 ± 0.241

6.022 ± 0.182

3.877 ± 0.122

3.56 ± 0.076

3.829 ± 0.149

7.303 ± 0.299

7.516 ± 0.397

6.653 ± 0.178

1.133 ± 0.094

4.215 ± 0.124
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski