Yaba monkey tumor virus (strain VR587) (YMTV)

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Chitovirales; Poxviridae; Chordopoxvirinae; Yatapoxvirus; Yaba monkey tumor virus

Average proteome isoelectric point is 7.22

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 140 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q6TUZ5|Q6TUZ5_YMTV5 16L OS=Yaba monkey tumor virus (strain VR587) OX=928314 PE=4 SV=1
MM1 pKa = 7.47NSTINFEE8 pKa = 4.27DD9 pKa = 3.99SEE11 pKa = 4.68FGANMVMVISVFVLMISFLVFMLLYY36 pKa = 10.06LIKK39 pKa = 9.58WSYY42 pKa = 11.41VMGFLNDD49 pKa = 3.49VKK51 pKa = 10.63IKK53 pKa = 10.0IMNMTTRR60 pKa = 11.84RR61 pKa = 11.84SFAHH65 pKa = 7.1LDD67 pKa = 3.81DD68 pKa = 4.65IYY70 pKa = 10.47YY71 pKa = 10.41TSDD74 pKa = 3.49DD75 pKa = 4.11VIGLNVEE82 pKa = 4.12

Molecular weight: 9.56 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q6TUW8|Q6TUW8_YMTV5 45L OS=Yaba monkey tumor virus (strain VR587) OX=928314 PE=4 SV=1
MM1 pKa = 7.52ALSTKK6 pKa = 10.1EE7 pKa = 3.65IFSAIGITCMALLMIISGGALTFKK31 pKa = 10.71SLAPHH36 pKa = 7.16RR37 pKa = 11.84IIVMRR42 pKa = 11.84SATFNKK48 pKa = 9.37ILSILEE54 pKa = 3.88YY55 pKa = 10.06VAILIFVPGTIALYY69 pKa = 9.93SAYY72 pKa = 9.58IKK74 pKa = 9.85TLILGG79 pKa = 3.88

Molecular weight: 8.52 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

140

0

140

42362

44

1895

302.6

34.95

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

2.743 ± 0.12

2.231 ± 0.12

5.8 ± 0.132

5.278 ± 0.143

5.913 ± 0.154

3.668 ± 0.118

1.678 ± 0.068

9.759 ± 0.2

9.365 ± 0.186

9.081 ± 0.159

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.446 ± 0.087

8.21 ± 0.173

2.882 ± 0.115

1.945 ± 0.081

3.121 ± 0.106

8.205 ± 0.193

5.245 ± 0.135

6.754 ± 0.17

0.647 ± 0.046

5.028 ± 0.129
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski