Bamboo mosaic virus satellite RNA

Taxonomy: Viruses; Satellites; RNA satellites; Single stranded RNA satellites; Large single stranded RNA satellites

Average proteome isoelectric point is 8.83

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q6XXN6|Q6XXN6_9VIRU Coat protein OS=Bamboo mosaic virus satellite RNA OX=190811 GN=P20 PE=4 SV=1
MM1 pKa = 6.79VRR3 pKa = 11.84RR4 pKa = 11.84RR5 pKa = 11.84NRR7 pKa = 11.84RR8 pKa = 11.84QRR10 pKa = 11.84SRR12 pKa = 11.84VSQMTDD18 pKa = 1.81IMYY21 pKa = 10.83GSLTLGSTTTWTRR34 pKa = 11.84KK35 pKa = 9.21NFPGLANMGDD45 pKa = 3.58RR46 pKa = 11.84PFQVISVKK54 pKa = 10.35IVVSSASPMLYY65 pKa = 9.52QARR68 pKa = 11.84LYY70 pKa = 10.85SPHH73 pKa = 7.69DD74 pKa = 4.42DD75 pKa = 4.3DD76 pKa = 5.75NVGSTGLQMSGTTPHH91 pKa = 5.55THH93 pKa = 6.59HH94 pKa = 6.31MRR96 pKa = 11.84ALPGQNTWFSGNTSSTQVIVAIDD119 pKa = 3.65GLKK122 pKa = 9.87TKK124 pKa = 8.21TTDD127 pKa = 3.01ATPQNAVAVQVFYY140 pKa = 10.92RR141 pKa = 11.84VAPSEE146 pKa = 4.11LQSATGNAEE155 pKa = 4.09MPTTTPFDD163 pKa = 3.67LPEE166 pKa = 5.73GYY168 pKa = 10.09EE169 pKa = 4.01YY170 pKa = 11.04LADD173 pKa = 3.19AWLPDD178 pKa = 3.72RR179 pKa = 11.84APTSS183 pKa = 3.45

Molecular weight: 20.15 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q6XXN6|Q6XXN6_9VIRU Coat protein OS=Bamboo mosaic virus satellite RNA OX=190811 GN=P20 PE=4 SV=1
MM1 pKa = 6.79VRR3 pKa = 11.84RR4 pKa = 11.84RR5 pKa = 11.84NRR7 pKa = 11.84RR8 pKa = 11.84QRR10 pKa = 11.84SRR12 pKa = 11.84VSQMTDD18 pKa = 1.81IMYY21 pKa = 10.83GSLTLGSTTTWTRR34 pKa = 11.84KK35 pKa = 9.21NFPGLANMGDD45 pKa = 3.58RR46 pKa = 11.84PFQVISVKK54 pKa = 10.35IVVSSASPMLYY65 pKa = 9.52QARR68 pKa = 11.84LYY70 pKa = 10.85SPHH73 pKa = 7.69DD74 pKa = 4.42DD75 pKa = 4.3DD76 pKa = 5.75NVGSTGLQMSGTTPHH91 pKa = 5.55THH93 pKa = 6.59HH94 pKa = 6.31MRR96 pKa = 11.84ALPGQNTWFSGNTSSTQVIVAIDD119 pKa = 3.65GLKK122 pKa = 9.87TKK124 pKa = 8.21TTDD127 pKa = 3.01ATPQNAVAVQVFYY140 pKa = 10.92RR141 pKa = 11.84VAPSEE146 pKa = 4.11LQSATGNAEE155 pKa = 4.09MPTTTPFDD163 pKa = 3.67LPEE166 pKa = 5.73GYY168 pKa = 10.09EE169 pKa = 4.01YY170 pKa = 11.04LADD173 pKa = 3.19AWLPDD178 pKa = 3.72RR179 pKa = 11.84APTSS183 pKa = 3.45

Molecular weight: 20.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

183

183

183

183.0

20.15

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.65 ± 0.0

0.0 ± 0.0

5.464 ± 0.0

2.186 ± 0.0

2.732 ± 0.0

6.557 ± 0.0

2.186 ± 0.0

2.732 ± 0.0

2.186 ± 0.0

6.557 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

4.372 ± 0.0

4.372 ± 0.0

7.104 ± 0.0

5.464 ± 0.0

7.104 ± 0.0

9.29 ± 0.0

12.022 ± 0.0

7.104 ± 0.0

1.639 ± 0.0

3.279 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski