Leucobacter luti

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Microbacteriaceae; Leucobacter

Average proteome isoelectric point is 6.07

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3417 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4V3CYA9|A0A4V3CYA9_9MICO NADPH2:quinone reductase OS=Leucobacter luti OX=340320 GN=EDF62_1347 PE=4 SV=1
MM1 pKa = 7.31NRR3 pKa = 11.84LTRR6 pKa = 11.84TLSITAASLLALTLAACTGSPRR28 pKa = 11.84PEE30 pKa = 4.35DD31 pKa = 3.73ATAHH35 pKa = 6.11GADD38 pKa = 4.58GYY40 pKa = 9.72PVTVTSCGTDD50 pKa = 3.34YY51 pKa = 10.96TYY53 pKa = 11.64DD54 pKa = 3.6RR55 pKa = 11.84APEE58 pKa = 3.99RR59 pKa = 11.84VLLGAPGIVRR69 pKa = 11.84TLDD72 pKa = 3.33EE73 pKa = 5.25LGVADD78 pKa = 4.18SAIGYY83 pKa = 6.32TLSDD87 pKa = 3.9YY88 pKa = 11.16AVEE91 pKa = 4.71GLDD94 pKa = 3.51EE95 pKa = 4.74FPNLTVTSADD105 pKa = 3.5YY106 pKa = 9.79TPSRR110 pKa = 11.84EE111 pKa = 4.11FLISAQPDD119 pKa = 3.65LFLSNDD125 pKa = 3.42EE126 pKa = 4.1QQLLGDD132 pKa = 4.52GAASVDD138 pKa = 3.87DD139 pKa = 5.03LGAIPANLYY148 pKa = 10.53VLGDD152 pKa = 3.83YY153 pKa = 11.0CVDD156 pKa = 3.79APAQSTLDD164 pKa = 3.44VVYY167 pKa = 10.94DD168 pKa = 4.54DD169 pKa = 5.15IEE171 pKa = 4.47HH172 pKa = 6.97LGAIYY177 pKa = 10.01NVPDD181 pKa = 3.48SAASLVEE188 pKa = 3.87EE189 pKa = 4.42LKK191 pKa = 11.16ARR193 pKa = 11.84VTAATAPLSFEE204 pKa = 4.64ADD206 pKa = 3.71FTAGAVTIFDD216 pKa = 3.76GKK218 pKa = 10.88VYY220 pKa = 10.84ALGGSYY226 pKa = 10.11YY227 pKa = 10.95AAILHH232 pKa = 6.61ALGLTNGFADD242 pKa = 5.26LDD244 pKa = 4.78SNWSEE249 pKa = 3.86ITPEE253 pKa = 3.78AVLASDD259 pKa = 4.78LDD261 pKa = 4.48VILVTAPEE269 pKa = 4.39GDD271 pKa = 3.02ATGAVEE277 pKa = 4.13TASEE281 pKa = 4.26LFANAPAAQHH291 pKa = 5.3GRR293 pKa = 11.84IVAIDD298 pKa = 3.45DD299 pKa = 3.6TAFQSVGVAIVDD311 pKa = 4.35VIEE314 pKa = 4.0EE315 pKa = 4.11TAAQLAVRR323 pKa = 4.77

Molecular weight: 33.57 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4R6S1X5|A0A4R6S1X5_9MICO Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase OS=Leucobacter luti OX=340320 GN=lgt PE=3 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 9.5VHH17 pKa = 5.46GFRR20 pKa = 11.84ARR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AIVAARR35 pKa = 11.84RR36 pKa = 11.84GKK38 pKa = 10.45GRR40 pKa = 11.84SKK42 pKa = 10.13LTAA45 pKa = 4.04

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3417

0

3417

1145008

29

5524

335.1

35.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.516 ± 0.058

0.555 ± 0.011

5.518 ± 0.037

6.007 ± 0.036

3.162 ± 0.023

8.933 ± 0.036

2.021 ± 0.019

4.759 ± 0.033

2.022 ± 0.028

10.191 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.807 ± 0.019

2.128 ± 0.024

5.439 ± 0.029

3.127 ± 0.023

6.945 ± 0.051

5.994 ± 0.03

6.295 ± 0.045

8.272 ± 0.035

1.412 ± 0.016

1.896 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski