Gordonia phage Utz

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fairfaxidumvirus; unclassified Fairfaxidumvirus

Average proteome isoelectric point is 6.18

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 71 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A160DFT8|A0A160DFT8_9CAUD Uncharacterized protein OS=Gordonia phage Utz OX=1838081 GN=23 PE=4 SV=1
MM1 pKa = 7.92ADD3 pKa = 3.27TTFSLDD9 pKa = 3.53EE10 pKa = 4.57LPTVVFTASFGSGGQPGLPSNTISIRR36 pKa = 11.84GTMANPHH43 pKa = 6.03YY44 pKa = 10.89NPDD47 pKa = 3.27YY48 pKa = 10.86DD49 pKa = 4.06YY50 pKa = 11.71SGNANGLNASNDD62 pKa = 2.68PWKK65 pKa = 10.66RR66 pKa = 11.84HH67 pKa = 4.59TEE69 pKa = 4.16TLVVTVMSFEE79 pKa = 4.57GPNAPVPADD88 pKa = 4.52PPPADD93 pKa = 4.58PDD95 pKa = 3.68PTPGQEE101 pKa = 4.13PTDD104 pKa = 3.76GG105 pKa = 3.69

Molecular weight: 11.0 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A160DIG2|A0A160DIG2_9CAUD Uncharacterized protein OS=Gordonia phage Utz OX=1838081 GN=57 PE=4 SV=1
MM1 pKa = 6.98NTTAADD7 pKa = 3.43QPTTEE12 pKa = 3.98RR13 pKa = 11.84SQFAEE18 pKa = 3.48RR19 pKa = 11.84DD20 pKa = 3.5NFRR23 pKa = 11.84DD24 pKa = 3.38LTPYY28 pKa = 10.68EE29 pKa = 3.99EE30 pKa = 5.72AILHH34 pKa = 6.09GMTKK38 pKa = 9.99PAYY41 pKa = 9.28FPGRR45 pKa = 11.84GYY47 pKa = 11.45FMVQGVYY54 pKa = 9.65QGYY57 pKa = 10.84ADD59 pKa = 4.44DD60 pKa = 4.87RR61 pKa = 11.84VITHH65 pKa = 7.31RR66 pKa = 11.84DD67 pKa = 3.01GTIEE71 pKa = 4.09VVPDD75 pKa = 3.37PRR77 pKa = 11.84IARR80 pKa = 11.84TDD82 pKa = 2.97RR83 pKa = 11.84RR84 pKa = 11.84RR85 pKa = 11.84ARR87 pKa = 11.84NKK89 pKa = 9.81AGRR92 pKa = 11.84KK93 pKa = 6.62SRR95 pKa = 11.84RR96 pKa = 11.84INRR99 pKa = 11.84IRR101 pKa = 11.84ARR103 pKa = 11.84RR104 pKa = 3.47

Molecular weight: 12.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

71

0

71

16136

54

1847

227.3

24.77

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.626 ± 0.48

0.806 ± 0.138

7.071 ± 0.32

5.385 ± 0.298

2.683 ± 0.159

8.497 ± 0.339

2.058 ± 0.161

4.462 ± 0.15

3.291 ± 0.269

7.623 ± 0.201

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.088 ± 0.205

2.857 ± 0.137

6.018 ± 0.224

3.384 ± 0.126

7.542 ± 0.486

5.392 ± 0.223

7.009 ± 0.264

7.753 ± 0.215

2.15 ± 0.127

2.305 ± 0.176
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski