Amino acid dipepetide frequency for Fusarium oxysporum f. sp. radicis-cucumerinum

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
8.247AlaAla: 8.247 ± 0.058
1.162AlaCys: 1.162 ± 0.015
4.104AlaAsp: 4.104 ± 0.023
4.965AlaGlu: 4.965 ± 0.036
3.173AlaPhe: 3.173 ± 0.023
5.46AlaGly: 5.46 ± 0.035
1.693AlaHis: 1.693 ± 0.014
4.545AlaIle: 4.545 ± 0.027
4.083AlaLys: 4.083 ± 0.029
7.627AlaLeu: 7.627 ± 0.039
1.98AlaMet: 1.98 ± 0.015
2.953AlaAsn: 2.953 ± 0.021
4.442AlaPro: 4.442 ± 0.037
3.244AlaGln: 3.244 ± 0.023
4.488AlaArg: 4.488 ± 0.025
6.923AlaSer: 6.923 ± 0.035
5.182AlaThr: 5.182 ± 0.035
5.251AlaVal: 5.251 ± 0.033
1.234AlaTrp: 1.234 ± 0.015
2.189AlaTyr: 2.189 ± 0.016
0.0AlaXaa: 0.0 ± 0.0
Cys
0.961CysAla: 0.961 ± 0.012
0.263CysCys: 0.263 ± 0.007
0.764CysAsp: 0.764 ± 0.01
0.671CysGlu: 0.671 ± 0.011
0.593CysPhe: 0.593 ± 0.01
0.979CysGly: 0.979 ± 0.014
0.372CysHis: 0.372 ± 0.008
0.815CysIle: 0.815 ± 0.012
0.602CysLys: 0.602 ± 0.01
1.356CysLeu: 1.356 ± 0.016
0.294CysMet: 0.294 ± 0.006
0.492CysAsn: 0.492 ± 0.007
0.687CysPro: 0.687 ± 0.01
0.53CysGln: 0.53 ± 0.009
0.804CysArg: 0.804 ± 0.01
0.989CysSer: 0.989 ± 0.013
0.76CysThr: 0.76 ± 0.012
0.864CysVal: 0.864 ± 0.012
0.244CysTrp: 0.244 ± 0.005
0.411CysTyr: 0.411 ± 0.008
0.0CysXaa: 0.0 ± 0.0
Asp
4.63AspAla: 4.63 ± 0.024
0.706AspCys: 0.706 ± 0.011
4.181AspAsp: 4.181 ± 0.031
4.47AspGlu: 4.47 ± 0.028
2.298AspPhe: 2.298 ± 0.018
4.055AspGly: 4.055 ± 0.029
1.312AspHis: 1.312 ± 0.016
3.31AspIle: 3.31 ± 0.025
2.714AspLys: 2.714 ± 0.02
5.182AspLeu: 5.182 ± 0.031
1.362AspMet: 1.362 ± 0.014
2.07AspAsn: 2.07 ± 0.015
3.309AspPro: 3.309 ± 0.023
1.976AspGln: 1.976 ± 0.015
2.972AspArg: 2.972 ± 0.023
4.127AspSer: 4.127 ± 0.021
3.103AspThr: 3.103 ± 0.021
3.699AspVal: 3.699 ± 0.024
0.971AspTrp: 0.971 ± 0.012
1.662AspTyr: 1.662 ± 0.014
0.0AspXaa: 0.0 ± 0.0
Glu
5.457GluAla: 5.457 ± 0.034
0.688GluCys: 0.688 ± 0.01
4.06GluAsp: 4.06 ± 0.027
5.029GluGlu: 5.029 ± 0.043
2.02GluPhe: 2.02 ± 0.016
3.612GluGly: 3.612 ± 0.022
1.451GluHis: 1.451 ± 0.015
3.123GluIle: 3.123 ± 0.021
3.68GluLys: 3.68 ± 0.027
5.239GluLeu: 5.239 ± 0.032
1.451GluMet: 1.451 ± 0.013
2.356GluAsn: 2.356 ± 0.017
2.926GluPro: 2.926 ± 0.027
2.426GluGln: 2.426 ± 0.02
3.735GluArg: 3.735 ± 0.03
4.299GluSer: 4.299 ± 0.032
3.78GluThr: 3.78 ± 0.029
3.601GluVal: 3.601 ± 0.024
0.936GluTrp: 0.936 ± 0.011
1.717GluTyr: 1.717 ± 0.016
0.0GluXaa: 0.0 ± 0.0
Phe
3.031PheAla: 3.031 ± 0.023
0.615PheCys: 0.615 ± 0.01
2.356PheAsp: 2.356 ± 0.017
2.224PheGlu: 2.224 ± 0.017
1.707PhePhe: 1.707 ± 0.018
2.904PheGly: 2.904 ± 0.025
0.948PheHis: 0.948 ± 0.011
2.028PheIle: 2.028 ± 0.019
1.671PheLys: 1.671 ± 0.014
3.528PheLeu: 3.528 ± 0.023
0.846PheMet: 0.846 ± 0.011
1.544PheAsn: 1.544 ± 0.013
1.929PhePro: 1.929 ± 0.014
1.466PheGln: 1.466 ± 0.013
1.953PheArg: 1.953 ± 0.018
3.031PheSer: 3.031 ± 0.023
2.261PheThr: 2.261 ± 0.016
2.429PheVal: 2.429 ± 0.019
0.708PheTrp: 0.708 ± 0.012
1.149PheTyr: 1.149 ± 0.014
0.0PheXaa: 0.0 ± 0.0
Gly
5.001GlyAla: 5.001 ± 0.037
0.943GlyCys: 0.943 ± 0.012
3.719GlyAsp: 3.719 ± 0.027
3.491GlyGlu: 3.491 ± 0.022
2.895GlyPhe: 2.895 ± 0.022
5.205GlyGly: 5.205 ± 0.045
1.704GlyHis: 1.704 ± 0.016
3.735GlyIle: 3.735 ± 0.026
3.421GlyLys: 3.421 ± 0.023
6.135GlyLeu: 6.135 ± 0.031
1.545GlyMet: 1.545 ± 0.013
2.662GlyAsn: 2.662 ± 0.022
3.255GlyPro: 3.255 ± 0.026
2.573GlyGln: 2.573 ± 0.02
3.905GlyArg: 3.905 ± 0.028
5.595GlySer: 5.595 ± 0.034
4.016GlyThr: 4.016 ± 0.041
4.215GlyVal: 4.215 ± 0.028
1.22GlyTrp: 1.22 ± 0.013
2.199GlyTyr: 2.199 ± 0.018
0.0GlyXaa: 0.0 ± 0.0
His
1.755HisAla: 1.755 ± 0.018
0.35HisCys: 0.35 ± 0.007
1.418HisAsp: 1.418 ± 0.014
1.416HisGlu: 1.416 ± 0.015
0.956HisPhe: 0.956 ± 0.012
1.751HisGly: 1.751 ± 0.015
0.815HisHis: 0.815 ± 0.013
1.304HisIle: 1.304 ± 0.014
1.007HisLys: 1.007 ± 0.016
2.285HisLeu: 2.285 ± 0.019
0.521HisMet: 0.521 ± 0.009
0.884HisAsn: 0.884 ± 0.009
1.545HisPro: 1.545 ± 0.015
0.999HisGln: 0.999 ± 0.012
1.486HisArg: 1.486 ± 0.014
1.751HisSer: 1.751 ± 0.017
1.215HisThr: 1.215 ± 0.014
1.45HisVal: 1.45 ± 0.014
0.374HisTrp: 0.374 ± 0.006
0.723HisTyr: 0.723 ± 0.01
0.0HisXaa: 0.0 ± 0.0
Ile
4.347IleAla: 4.347 ± 0.026
0.834IleCys: 0.834 ± 0.01
3.087IleAsp: 3.087 ± 0.02
3.123IleGlu: 3.123 ± 0.024
2.112IlePhe: 2.112 ± 0.019
3.398IleGly: 3.398 ± 0.026
1.279IleHis: 1.279 ± 0.015
2.81IleIle: 2.81 ± 0.024
2.408IleLys: 2.408 ± 0.018
4.753IleLeu: 4.753 ± 0.03
1.132IleMet: 1.132 ± 0.012
1.998IleAsn: 1.998 ± 0.015
3.09IlePro: 3.09 ± 0.02
2.035IleGln: 2.035 ± 0.016
2.895IleArg: 2.895 ± 0.021
4.049IleSer: 4.049 ± 0.025
3.066IleThr: 3.066 ± 0.031
3.301IleVal: 3.301 ± 0.024
0.849IleTrp: 0.849 ± 0.012
1.501IleTyr: 1.501 ± 0.015
0.0IleXaa: 0.0 ± 0.0
Lys
4.345LysAla: 4.345 ± 0.03
0.597LysCys: 0.597 ± 0.011
3.098LysAsp: 3.098 ± 0.028
3.375LysGlu: 3.375 ± 0.027
1.556LysPhe: 1.556 ± 0.014
3.086LysGly: 3.086 ± 0.023
1.219LysHis: 1.219 ± 0.014
2.384LysIle: 2.384 ± 0.018
3.273LysLys: 3.273 ± 0.032
4.269LysLeu: 4.269 ± 0.027
1.039LysMet: 1.039 ± 0.01
1.89LysAsn: 1.89 ± 0.018
2.854LysPro: 2.854 ± 0.024
1.876LysGln: 1.876 ± 0.017
3.284LysArg: 3.284 ± 0.023
3.58LysSer: 3.58 ± 0.026
3.072LysThr: 3.072 ± 0.022
2.929LysVal: 2.929 ± 0.022
0.762LysTrp: 0.762 ± 0.01
1.432LysTyr: 1.432 ± 0.014
0.0LysXaa: 0.0 ± 0.0
Leu
7.744LeuAla: 7.744 ± 0.038
1.298LeuCys: 1.298 ± 0.015
5.302LeuAsp: 5.302 ± 0.03
5.585LeuGlu: 5.585 ± 0.031
3.41LeuPhe: 3.41 ± 0.026
6.018LeuGly: 6.018 ± 0.034
2.215LeuHis: 2.215 ± 0.021
4.245LeuIle: 4.245 ± 0.029
4.306LeuLys: 4.306 ± 0.026
8.219LeuLeu: 8.219 ± 0.047
1.885LeuMet: 1.885 ± 0.017
3.256LeuAsn: 3.256 ± 0.023
5.282LeuPro: 5.282 ± 0.028
3.798LeuGln: 3.798 ± 0.023
5.495LeuArg: 5.495 ± 0.034
7.207LeuSer: 7.207 ± 0.03
4.886LeuThr: 4.886 ± 0.026
5.484LeuVal: 5.484 ± 0.03
1.297LeuTrp: 1.297 ± 0.015
2.407LeuTyr: 2.407 ± 0.019
0.0LeuXaa: 0.0 ± 0.0
Met
2.289MetAla: 2.289 ± 0.018
0.26MetCys: 0.26 ± 0.005
1.263MetAsp: 1.263 ± 0.013
1.28MetGlu: 1.28 ± 0.012
0.795MetPhe: 0.795 ± 0.01
1.496MetGly: 1.496 ± 0.015
0.498MetHis: 0.498 ± 0.008
1.099MetIle: 1.099 ± 0.012
1.071MetLys: 1.071 ± 0.012
1.881MetLeu: 1.881 ± 0.015
0.622MetMet: 0.622 ± 0.01
0.839MetAsn: 0.839 ± 0.012
1.296MetPro: 1.296 ± 0.015
0.855MetGln: 0.855 ± 0.01
1.218MetArg: 1.218 ± 0.013
1.989MetSer: 1.989 ± 0.014
1.37MetThr: 1.37 ± 0.011
1.338MetVal: 1.338 ± 0.013
0.274MetTrp: 0.274 ± 0.006
0.537MetTyr: 0.537 ± 0.008
0.0MetXaa: 0.0 ± 0.0
Asn
3.071AsnAla: 3.071 ± 0.019
0.516AsnCys: 0.516 ± 0.01
2.123AsnAsp: 2.123 ± 0.018
2.139AsnGlu: 2.139 ± 0.015
1.439AsnPhe: 1.439 ± 0.014
3.001AsnGly: 3.001 ± 0.024
0.884AsnHis: 0.884 ± 0.011
2.172AsnIle: 2.172 ± 0.017
1.781AsnLys: 1.781 ± 0.014
3.391AsnLeu: 3.391 ± 0.022
0.929AsnMet: 0.929 ± 0.013
1.623AsnAsn: 1.623 ± 0.017
2.404AsnPro: 2.404 ± 0.019
1.404AsnGln: 1.404 ± 0.013
1.957AsnArg: 1.957 ± 0.015
2.848AsnSer: 2.848 ± 0.021
2.298AsnThr: 2.298 ± 0.019
2.315AsnVal: 2.315 ± 0.019
0.643AsnTrp: 0.643 ± 0.011
1.1AsnTyr: 1.1 ± 0.012
0.0AsnXaa: 0.0 ± 0.0
Pro
4.712ProAla: 4.712 ± 0.034
0.582ProCys: 0.582 ± 0.01
3.311ProAsp: 3.311 ± 0.022
3.955ProGlu: 3.955 ± 0.029
2.096ProPhe: 2.096 ± 0.019
3.906ProGly: 3.906 ± 0.045
1.249ProHis: 1.249 ± 0.016
2.571ProIle: 2.571 ± 0.019
2.756ProLys: 2.756 ± 0.023
4.519ProLeu: 4.519 ± 0.024
1.1ProMet: 1.1 ± 0.013
2.197ProAsn: 2.197 ± 0.018
4.383ProPro: 4.383 ± 0.051
2.383ProGln: 2.383 ± 0.026
3.192ProArg: 3.192 ± 0.022
5.487ProSer: 5.487 ± 0.034
3.771ProThr: 3.771 ± 0.029
3.516ProVal: 3.516 ± 0.029
0.819ProTrp: 0.819 ± 0.011
1.523ProTyr: 1.523 ± 0.016
0.0ProXaa: 0.0 ± 0.0
Gln
3.432GlnAla: 3.432 ± 0.023
0.484GlnCys: 0.484 ± 0.008
2.284GlnAsp: 2.284 ± 0.016
2.442GlnGlu: 2.442 ± 0.022
1.303GlnPhe: 1.303 ± 0.013
2.538GlnGly: 2.538 ± 0.024
1.062GlnHis: 1.062 ± 0.013
1.924GlnIle: 1.924 ± 0.016
1.959GlnLys: 1.959 ± 0.017
3.461GlnLeu: 3.461 ± 0.024
0.87GlnMet: 0.87 ± 0.012
1.581GlnAsn: 1.581 ± 0.014
2.477GlnPro: 2.477 ± 0.025
2.218GlnGln: 2.218 ± 0.028
2.533GlnArg: 2.533 ± 0.024
3.023GlnSer: 3.023 ± 0.023
2.313GlnThr: 2.313 ± 0.02
2.277GlnVal: 2.277 ± 0.02
0.621GlnTrp: 0.621 ± 0.009
1.168GlnTyr: 1.168 ± 0.014
0.0GlnXaa: 0.0 ± 0.0
Arg
4.282ArgAla: 4.282 ± 0.025
0.768ArgCys: 0.768 ± 0.011
3.386ArgAsp: 3.386 ± 0.023
3.563ArgGlu: 3.563 ± 0.026
2.148ArgPhe: 2.148 ± 0.018
3.458ArgGly: 3.458 ± 0.027
1.535ArgHis: 1.535 ± 0.015
2.907ArgIle: 2.907 ± 0.024
3.286ArgLys: 3.286 ± 0.024
5.364ArgLeu: 5.364 ± 0.032
1.269ArgMet: 1.269 ± 0.013
2.278ArgAsn: 2.278 ± 0.017
3.306ArgPro: 3.306 ± 0.023
2.556ArgGln: 2.556 ± 0.023
4.724ArgArg: 4.724 ± 0.036
4.426ArgSer: 4.426 ± 0.03
3.125ArgThr: 3.125 ± 0.023
3.3ArgVal: 3.3 ± 0.021
0.973ArgTrp: 0.973 ± 0.012
1.715ArgTyr: 1.715 ± 0.017
0.0ArgXaa: 0.0 ± 0.0
Ser
6.126SerAla: 6.126 ± 0.039
0.991SerCys: 0.991 ± 0.014
4.342SerAsp: 4.342 ± 0.023
4.188SerGlu: 4.188 ± 0.028
3.104SerPhe: 3.104 ± 0.022
5.37SerGly: 5.37 ± 0.038
1.928SerHis: 1.928 ± 0.018
4.198SerIle: 4.198 ± 0.024
3.834SerLys: 3.834 ± 0.026
7.169SerLeu: 7.169 ± 0.036
1.771SerMet: 1.771 ± 0.018
3.021SerAsn: 3.021 ± 0.021
5.057SerPro: 5.057 ± 0.039
3.309SerGln: 3.309 ± 0.026
4.741SerArg: 4.741 ± 0.03
7.957SerSer: 7.957 ± 0.053
5.314SerThr: 5.314 ± 0.035
4.517SerVal: 4.517 ± 0.023
1.264SerTrp: 1.264 ± 0.012
2.133SerTyr: 2.133 ± 0.02
0.0SerXaa: 0.0 ± 0.0
Thr
5.058ThrAla: 5.058 ± 0.03
0.839ThrCys: 0.839 ± 0.013
2.926ThrAsp: 2.926 ± 0.021
3.318ThrGlu: 3.318 ± 0.027
2.318ThrPhe: 2.318 ± 0.019
4.165ThrGly: 4.165 ± 0.028
1.255ThrHis: 1.255 ± 0.012
3.377ThrIle: 3.377 ± 0.039
2.886ThrLys: 2.886 ± 0.023
5.234ThrLeu: 5.234 ± 0.028
1.232ThrMet: 1.232 ± 0.014
2.21ThrAsn: 2.21 ± 0.018
4.073ThrPro: 4.073 ± 0.037
2.173ThrGln: 2.173 ± 0.02
3.131ThrArg: 3.131 ± 0.024
5.206ThrSer: 5.206 ± 0.04
4.374ThrThr: 4.374 ± 0.064
3.799ThrVal: 3.799 ± 0.046
0.954ThrTrp: 0.954 ± 0.011
1.719ThrTyr: 1.719 ± 0.017
0.0ThrXaa: 0.0 ± 0.0
Val
5.106ValAla: 5.106 ± 0.031
0.881ValCys: 0.881 ± 0.012
3.706ValAsp: 3.706 ± 0.024
3.847ValGlu: 3.847 ± 0.024
2.572ValPhe: 2.572 ± 0.023
3.879ValGly: 3.879 ± 0.029
1.383ValHis: 1.383 ± 0.016
3.174ValIle: 3.174 ± 0.025
3.056ValLys: 3.056 ± 0.024
5.572ValLeu: 5.572 ± 0.035
1.36ValMet: 1.36 ± 0.011
2.28ValAsn: 2.28 ± 0.018
3.527ValPro: 3.527 ± 0.024
2.376ValGln: 2.376 ± 0.019
3.223ValArg: 3.223 ± 0.021
4.633ValSer: 4.633 ± 0.024
3.679ValThr: 3.679 ± 0.041
4.233ValVal: 4.233 ± 0.03
0.897ValTrp: 0.897 ± 0.013
1.786ValTyr: 1.786 ± 0.015
0.0ValXaa: 0.0 ± 0.0
Trp
1.224TrpAla: 1.224 ± 0.013
0.22TrpCys: 0.22 ± 0.005
0.949TrpAsp: 0.949 ± 0.012
0.895TrpGlu: 0.895 ± 0.012
0.612TrpPhe: 0.612 ± 0.009
1.016TrpGly: 1.016 ± 0.012
0.397TrpHis: 0.397 ± 0.007
0.883TrpIle: 0.883 ± 0.011
0.904TrpLys: 0.904 ± 0.01
1.478TrpLeu: 1.478 ± 0.016
0.402TrpMet: 0.402 ± 0.006
0.71TrpAsn: 0.71 ± 0.01
0.683TrpPro: 0.683 ± 0.011
0.622TrpGln: 0.622 ± 0.01
0.961TrpArg: 0.961 ± 0.012
1.153TrpSer: 1.153 ± 0.012
1.008TrpThr: 1.008 ± 0.013
0.961TrpVal: 0.961 ± 0.011
0.306TrpTrp: 0.306 ± 0.006
0.477TrpTyr: 0.477 ± 0.008
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.124TyrAla: 2.124 ± 0.019
0.454TyrCys: 0.454 ± 0.008
1.726TyrAsp: 1.726 ± 0.015
1.612TyrGlu: 1.612 ± 0.014
1.221TyrPhe: 1.221 ± 0.015
2.141TyrGly: 2.141 ± 0.02
0.807TyrHis: 0.807 ± 0.011
1.463TyrIle: 1.463 ± 0.015
1.225TyrLys: 1.225 ± 0.013
2.676TyrLeu: 2.676 ± 0.021
0.661TyrMet: 0.661 ± 0.01
1.195TyrAsn: 1.195 ± 0.012
1.501TyrPro: 1.501 ± 0.017
1.151TyrGln: 1.151 ± 0.012
1.675TyrArg: 1.675 ± 0.014
2.06TyrSer: 2.06 ± 0.017
1.652TyrThr: 1.652 ± 0.017
1.691TyrVal: 1.691 ± 0.016
0.514TyrTrp: 0.514 ± 0.009
0.977TyrTyr: 0.977 ± 0.012
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 16940 proteins (8032873 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski