Desulfoglaeba alkanexedens ALDC

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Syntrophobacterales; Syntrophobacteraceae; Desulfoglaeba; Desulfoglaeba alkanexedens

Average proteome isoelectric point is 6.76

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2850 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8L1K2|A0A4P8L1K2_9DELT MarR family transcriptional regulator OS=Desulfoglaeba alkanexedens ALDC OX=980445 GN=FDQ92_00270 PE=4 SV=1
MM1 pKa = 7.81DD2 pKa = 5.74RR3 pKa = 11.84YY4 pKa = 10.37VCQICGYY11 pKa = 10.7VYY13 pKa = 10.83DD14 pKa = 5.34PDD16 pKa = 5.05QGDD19 pKa = 4.12PDD21 pKa = 3.91NGIAPGTPFEE31 pKa = 4.86KK32 pKa = 10.92LPDD35 pKa = 3.7DD36 pKa = 3.82WTCPVCGASKK46 pKa = 11.02SEE48 pKa = 4.15FEE50 pKa = 4.7KK51 pKa = 10.98EE52 pKa = 3.79

Molecular weight: 5.79 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8L2D2|A0A4P8L2D2_9DELT ABC_transp_aux domain-containing protein OS=Desulfoglaeba alkanexedens ALDC OX=980445 GN=FDQ92_07635 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLKK11 pKa = 10.2RR12 pKa = 11.84KK13 pKa = 7.55RR14 pKa = 11.84THH16 pKa = 5.91GFLVRR21 pKa = 11.84MATRR25 pKa = 11.84SGRR28 pKa = 11.84AVIRR32 pKa = 11.84RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.59GRR39 pKa = 11.84KK40 pKa = 8.66RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2850

0

2850

914423

22

2062

320.9

35.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.424 ± 0.053

1.298 ± 0.022

5.304 ± 0.032

7.289 ± 0.046

4.047 ± 0.029

7.911 ± 0.036

2.249 ± 0.018

5.216 ± 0.036

4.17 ± 0.038

10.504 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.325 ± 0.019

2.567 ± 0.022

5.116 ± 0.029

3.062 ± 0.029

8.013 ± 0.046

5.193 ± 0.031

4.684 ± 0.028

7.771 ± 0.043

1.281 ± 0.019

2.578 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski