Flavivirga rizhaonensis

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavivirga

Average proteome isoelectric point is 6.74

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4045 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4S1E2P9|A0A4S1E2P9_9FLAO AhpC/TSA family protein OS=Flavivirga rizhaonensis OX=2559571 GN=EM932_01795 PE=4 SV=1
MM1 pKa = 7.24NKK3 pKa = 9.42IMMHH7 pKa = 6.86LLQKK11 pKa = 9.94KK12 pKa = 9.1LQMLTIVFLSSMGAMAQAEE31 pKa = 4.92YY32 pKa = 9.02ITTWNTTNAGVSNSNSIIIPAIGGRR57 pKa = 11.84YY58 pKa = 9.69DD59 pKa = 3.41VDD61 pKa = 3.14IGNDD65 pKa = 3.41GSYY68 pKa = 11.05EE69 pKa = 3.98LLNQTGRR76 pKa = 11.84ITIDD80 pKa = 3.3VTAHH84 pKa = 6.39GYY86 pKa = 8.9AAGVIQIALRR96 pKa = 11.84NAISGAGNLEE106 pKa = 3.98QIQFEE111 pKa = 4.18PSGTNTDD118 pKa = 2.89NGKK121 pKa = 9.47IVSIDD126 pKa = 2.98QWGNSIVWLSMHH138 pKa = 6.34SAYY141 pKa = 10.33HH142 pKa = 5.28SCINLDD148 pKa = 3.38VVAFDD153 pKa = 5.16APNLSQVFNMILMFANCTSMVGTPAFNTWDD183 pKa = 3.56VSNVTTTGGMFGDD196 pKa = 4.15TPFNQPLNNWDD207 pKa = 3.45VSNVTNMGFMFSNCPFNQPIGNWVTSSVTNLTGMFFNNTVFNQPIGNWDD256 pKa = 3.3VSLVTNMQGVFNGATSFNQPLNNWNVSSVIVMDD289 pKa = 4.25DD290 pKa = 3.06MFRR293 pKa = 11.84RR294 pKa = 11.84ATSFNQPLNNWDD306 pKa = 3.33VSNVVDD312 pKa = 4.06MNLMFLSSAFNQPIGNWDD330 pKa = 3.44VSSVTNMGGMFFNNTVFNQPIGSWDD355 pKa = 3.46VSSVIDD361 pKa = 3.82MNSMFNNATTFNQSLGAWNIGNLTSGVGFLDD392 pKa = 3.66NSGLSLANWDD402 pKa = 3.63ATLTGWDD409 pKa = 3.38AQGFGNPNVTIGANGLQYY427 pKa = 10.86CSAQTQRR434 pKa = 11.84DD435 pKa = 3.5AMQTAGIFTFVGDD448 pKa = 4.12VLGCTPIITCGDD460 pKa = 3.59AFNASSISKK469 pKa = 9.44FSNRR473 pKa = 11.84FEE475 pKa = 4.39VTLHH479 pKa = 6.63LDD481 pKa = 3.47APTGLAFNTDD491 pKa = 3.38GTKK494 pKa = 9.49MFAIAEE500 pKa = 4.27GLGGNDD506 pKa = 5.5DD507 pKa = 5.37IIAEE511 pKa = 4.31YY512 pKa = 10.39NLSIGFDD519 pKa = 3.42TTTAVYY525 pKa = 10.43AGAAEE530 pKa = 4.0QFFVGGQEE538 pKa = 4.1SDD540 pKa = 3.29PHH542 pKa = 7.48GLTFNAEE549 pKa = 3.97GTKK552 pKa = 9.76MFVIGLNGDD561 pKa = 3.57AVVEE565 pKa = 4.3YY566 pKa = 10.54NLGVAFDD573 pKa = 3.86VSTAIHH579 pKa = 6.55AGAAEE584 pKa = 4.1EE585 pKa = 4.36FFVGGQEE592 pKa = 4.0TSPTGLAFNTDD603 pKa = 3.42GTKK606 pKa = 9.48MFAVGVDD613 pKa = 3.47DD614 pKa = 4.52GAVVEE619 pKa = 4.79YY620 pKa = 10.73NLSTGFDD627 pKa = 3.34VSTAVYY633 pKa = 10.09AGASEE638 pKa = 4.21EE639 pKa = 4.24FFVGGQEE646 pKa = 4.2SSPTGLTFNTDD657 pKa = 2.93GTKK660 pKa = 9.66MFVIGLNGDD669 pKa = 3.57AVVEE673 pKa = 4.35YY674 pKa = 10.32NLSAGFDD681 pKa = 3.52VSTAVYY687 pKa = 10.16AGTSEE692 pKa = 4.1EE693 pKa = 4.32FSLLGYY699 pKa = 9.54SASPVDD705 pKa = 5.64LVFNTNGTKK714 pKa = 10.36LYY716 pKa = 10.97VLDD719 pKa = 4.36GLFGGNYY726 pKa = 9.35VLEE729 pKa = 4.62FVQDD733 pKa = 3.04VDD735 pKa = 3.99NYY737 pKa = 11.24HH738 pKa = 6.86EE739 pKa = 4.34ATATNGNIMANTKK752 pKa = 9.64PLVYY756 pKa = 10.13TIINDD761 pKa = 3.91TFSDD765 pKa = 3.9TNNDD769 pKa = 3.52DD770 pKa = 3.78VLDD773 pKa = 4.25GGFTISNLPSGLTAEE788 pKa = 5.07FVLSHH793 pKa = 6.83GDD795 pKa = 3.23TRR797 pKa = 11.84ATLVLSGNAANNNSSNSIATLNIVFNATAVTSNTAPTLNCSSTTGIDD844 pKa = 4.17FIDD847 pKa = 3.93SAIVCANIFDD857 pKa = 4.05VSTSEE862 pKa = 4.26FSNQFSVNAQEE873 pKa = 3.93NQLRR877 pKa = 11.84GVEE880 pKa = 4.3FNTDD884 pKa = 2.99GTKK887 pKa = 9.63MFVIGDD893 pKa = 3.63SDD895 pKa = 4.06DD896 pKa = 5.92AIVEE900 pKa = 4.47YY901 pKa = 10.86NLSTGFDD908 pKa = 3.34VSTAVYY914 pKa = 10.18AGASQEE920 pKa = 4.19FFFGGQVPNPLNFAFSTDD938 pKa = 3.21GTKK941 pKa = 10.84LFIINGIGPGGSSGLYY957 pKa = 9.63QYY959 pKa = 11.88NLGTGFDD966 pKa = 3.36VSTAVFAGGFHH977 pKa = 7.0RR978 pKa = 11.84RR979 pKa = 11.84FISQEE984 pKa = 3.9SFPTDD989 pKa = 3.09LAFNTDD995 pKa = 3.18GSKK998 pKa = 9.73MFIIGVSDD1006 pKa = 3.84DD1007 pKa = 3.95AVIEE1011 pKa = 4.33YY1012 pKa = 10.28ILRR1015 pKa = 11.84ANFDD1019 pKa = 3.4ISTMVYY1025 pKa = 10.12AGAAEE1030 pKa = 4.26EE1031 pKa = 4.26FSVVAQEE1038 pKa = 4.7SEE1040 pKa = 4.2PTGLAFNTDD1049 pKa = 3.22GTKK1052 pKa = 9.6MFVIGNSGDD1061 pKa = 3.52AVVEE1065 pKa = 4.38YY1066 pKa = 10.74NLSTGFDD1073 pKa = 3.31VSTAVYY1079 pKa = 10.01SGASEE1084 pKa = 4.26EE1085 pKa = 4.41FSVTTFEE1092 pKa = 5.14AIPRR1096 pKa = 11.84GLAFNANGSKK1106 pKa = 10.49LYY1108 pKa = 10.91VSGLVRR1114 pKa = 11.84DD1115 pKa = 4.53SIIEE1119 pKa = 4.09FAVGEE1124 pKa = 3.98ADD1126 pKa = 3.31NYY1128 pKa = 11.02EE1129 pKa = 4.03EE1130 pKa = 5.09ASINNGSIATNTSPFIYY1147 pKa = 10.1NVSNDD1152 pKa = 2.97TFADD1156 pKa = 3.73VNNDD1160 pKa = 4.03DD1161 pKa = 4.38ILDD1164 pKa = 3.94GGFTIGNLSPGLTPQFVLSNGDD1186 pKa = 3.25TTATLVLSGNATNNSSSDD1204 pKa = 3.59NIADD1208 pKa = 4.06LNISFNTTAITSTTVPILDD1227 pKa = 4.36CNTIVGIDD1235 pKa = 3.67FLDD1238 pKa = 4.27NINLNGRR1245 pKa = 11.84LRR1247 pKa = 11.84HH1248 pKa = 6.02GKK1250 pKa = 9.64FFLNGSEE1257 pKa = 4.03QPMVTGRR1264 pKa = 11.84NANN1267 pKa = 3.36

Molecular weight: 134.77 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4S1DXL5|A0A4S1DXL5_9FLAO SRPBCC domain-containing protein OS=Flavivirga rizhaonensis OX=2559571 GN=EM932_08855 PE=3 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSKK10 pKa = 9.13RR11 pKa = 11.84KK12 pKa = 9.48RR13 pKa = 11.84RR14 pKa = 11.84NKK16 pKa = 9.49HH17 pKa = 3.94GFRR20 pKa = 11.84EE21 pKa = 4.27RR22 pKa = 11.84MASANGRR29 pKa = 11.84KK30 pKa = 9.04VLARR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 9.76GRR40 pKa = 11.84KK41 pKa = 7.91RR42 pKa = 11.84LSVSSEE48 pKa = 3.87TRR50 pKa = 11.84HH51 pKa = 5.96KK52 pKa = 10.68KK53 pKa = 9.8

Molecular weight: 6.35 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4045

0

4045

1423285

23

4414

351.9

39.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.829 ± 0.035

0.778 ± 0.013

5.732 ± 0.03

6.31 ± 0.039

5.256 ± 0.029

6.266 ± 0.039

1.8 ± 0.016

8.377 ± 0.037

8.195 ± 0.056

9.168 ± 0.038

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.005 ± 0.019

6.753 ± 0.043

3.289 ± 0.025

3.104 ± 0.021

3.303 ± 0.024

6.701 ± 0.028

5.881 ± 0.047

5.967 ± 0.025

1.083 ± 0.014

4.2 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski