Aquimonas voraii

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Rhodanobacteraceae; Aquimonas

Average proteome isoelectric point is 6.48

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3593 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1G6X711|A0A1G6X711_9GAMM DNA polymerase IV OS=Aquimonas voraii OX=265719 GN=dinB PE=3 SV=1
MM1 pKa = 7.68RR2 pKa = 11.84RR3 pKa = 11.84QSPRR7 pKa = 11.84KK8 pKa = 9.59SLVWLCGSLIGGLGAWSALPAQNAAALEE36 pKa = 4.19YY37 pKa = 10.14EE38 pKa = 4.21FAEE41 pKa = 4.0IHH43 pKa = 5.61EE44 pKa = 4.98AEE46 pKa = 4.46ALAPPGKK53 pKa = 9.61PGAPSMGSPLGAAPALLGMGFDD75 pKa = 5.88GEE77 pKa = 4.4IEE79 pKa = 4.41PNNSSATASPLAEE92 pKa = 3.79RR93 pKa = 11.84QGVVRR98 pKa = 11.84AKK100 pKa = 9.98LWPAADD106 pKa = 3.18IDD108 pKa = 4.18VFAIAAQAGDD118 pKa = 3.59RR119 pKa = 11.84LYY121 pKa = 11.35AGVMTSASAGSGTDD135 pKa = 2.95SLLQVIAPDD144 pKa = 3.47GTTVIEE150 pKa = 4.57ADD152 pKa = 4.01DD153 pKa = 4.17NDD155 pKa = 3.8GSFAGTSSGVAGTTLTSAGTYY176 pKa = 8.59YY177 pKa = 10.78LQVSSPSATATVRR190 pKa = 11.84PYY192 pKa = 9.98EE193 pKa = 3.76LHH195 pKa = 6.25YY196 pKa = 10.44RR197 pKa = 11.84LQAGSPTAEE206 pKa = 3.94VEE208 pKa = 4.42PNDD211 pKa = 3.74TAATANPLPASGWVSGARR229 pKa = 11.84GIAAATEE236 pKa = 3.99QDD238 pKa = 3.84WYY240 pKa = 11.44SLSLNAGDD248 pKa = 4.3TVFLSLDD255 pKa = 3.83LDD257 pKa = 3.91PEE259 pKa = 4.41RR260 pKa = 11.84DD261 pKa = 3.49NVQWDD266 pKa = 3.41GRR268 pKa = 11.84LGLGLFGDD276 pKa = 4.81ASNQILVANDD286 pKa = 3.25TSTGSVANPLSEE298 pKa = 4.16TLFITVKK305 pKa = 10.42EE306 pKa = 4.01AGTYY310 pKa = 9.58FAFVDD315 pKa = 3.87SANAAVGGPTATYY328 pKa = 9.03QLSVSVQPAANEE340 pKa = 4.06GLNCTTYY347 pKa = 10.54TSTDD351 pKa = 3.28VPVAIGPNPGLATSTITIPGNPRR374 pKa = 11.84IADD377 pKa = 3.85LDD379 pKa = 3.66VSLQLNHH386 pKa = 6.79AFMNDD391 pKa = 1.87IDD393 pKa = 4.19AQLVSPAGNSVGLFTDD409 pKa = 3.63IGATSAGGQAQMDD422 pKa = 4.0TVFDD426 pKa = 4.41DD427 pKa = 4.27EE428 pKa = 4.82AAIPPSFTALRR439 pKa = 11.84GLALKK444 pKa = 10.61PEE446 pKa = 4.43LNYY449 pKa = 10.71RR450 pKa = 11.84LAWFDD455 pKa = 3.36GTDD458 pKa = 4.27AGGTWTLEE466 pKa = 3.94LRR468 pKa = 11.84DD469 pKa = 4.61DD470 pKa = 4.72ANTDD474 pKa = 3.35GGNLTGWSLRR484 pKa = 11.84VCEE487 pKa = 4.86APPPPTCAAGFTPVTVYY504 pKa = 9.84STDD507 pKa = 3.8FEE509 pKa = 5.68AGAAGFTSSGIANEE523 pKa = 4.2WEE525 pKa = 4.18LGLPATAGTTTTNPIAAFSSCASGSSCWKK554 pKa = 8.72TDD556 pKa = 3.52LDD558 pKa = 3.8GTYY561 pKa = 10.6DD562 pKa = 3.63LSSSQDD568 pKa = 3.64LLSPNIDD575 pKa = 3.25LSGLQPPVLVRR586 pKa = 11.84WSQRR590 pKa = 11.84YY591 pKa = 7.35QMEE594 pKa = 4.17SANFDD599 pKa = 3.66RR600 pKa = 11.84YY601 pKa = 10.35HH602 pKa = 7.46VDD604 pKa = 3.66FRR606 pKa = 11.84QVGSGSGLRR615 pKa = 11.84LFEE618 pKa = 4.15WADD621 pKa = 3.07ATMANAVGNPTLQIPAAAGWSQKK644 pKa = 8.78LVRR647 pKa = 11.84ADD649 pKa = 3.66ALAGQNTEE657 pKa = 4.76LLFHH661 pKa = 7.19LDD663 pKa = 2.91SDD665 pKa = 4.17TTVNFAGVAIDD676 pKa = 4.18DD677 pKa = 4.24VSVTACRR684 pKa = 11.84ALSADD689 pKa = 3.89LAITKK694 pKa = 9.44TNGSTTSVPGGSTTYY709 pKa = 10.52TITSSNAGPDD719 pKa = 3.49AVTGATVTDD728 pKa = 4.17TFPAALTCSWTCVGAGGGTCTAASSGNLNDD758 pKa = 4.78SVNLPAGASVTHH770 pKa = 6.77TATCAIAAAATGTLSNTATISSTITDD796 pKa = 3.73PTPANNSATDD806 pKa = 3.56SDD808 pKa = 4.4TLSPQADD815 pKa = 3.63LSITKK820 pKa = 9.51TDD822 pKa = 3.24GQTAVPAGGSTVYY835 pKa = 10.62TITASNAGPSDD846 pKa = 3.86APGSTVADD854 pKa = 4.09TLPAACTSVSWTCVAAGGGTCTAAGSGNIGDD885 pKa = 4.64AANLPAGASVSYY897 pKa = 9.05TASCAIAAAASGTLSNTATVSSAVTDD923 pKa = 3.68PTPGNNAATDD933 pKa = 3.82SSSVLPPGALGASPSTLSFGTVSVGATSASQTVTLSNSGGSPLTIASLGAAAAPFALVGGSCGAVPITLAAGASCTLAYY1012 pKa = 10.48SFSPSAAGLATQSLTVNAGSAGSASLALSGIGGVGSLGLLSSSLDD1057 pKa = 3.5FGRR1060 pKa = 11.84VQVGAGGQLSLTLTNTGSGGLDD1082 pKa = 3.18VTGLSAVSAPFAQITGGSCGVVPFSLAAGTSCTVLYY1118 pKa = 10.48RR1119 pKa = 11.84FAPTATGSFNQTVTVSSTAGSATANLVGIGFVVTAVDD1156 pKa = 3.75AMDD1159 pKa = 4.05ARR1161 pKa = 11.84SLSLLALILGLIGWVTLRR1179 pKa = 11.84RR1180 pKa = 11.84RR1181 pKa = 11.84GG1182 pKa = 3.37

Molecular weight: 117.45 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1G6YWL0|A0A1G6YWL0_9GAMM Uncharacterized protein OS=Aquimonas voraii OX=265719 GN=SAMN04488509_11168 PE=4 SV=1
MM1 pKa = 7.69LIAKK5 pKa = 9.04PVGRR9 pKa = 11.84VFARR13 pKa = 11.84EE14 pKa = 3.4RR15 pKa = 11.84GRR17 pKa = 11.84RR18 pKa = 11.84HH19 pKa = 5.25HH20 pKa = 6.81HH21 pKa = 5.92PLRR24 pKa = 11.84LRR26 pKa = 11.84RR27 pKa = 11.84PPPRR31 pKa = 11.84HH32 pKa = 5.34RR33 pKa = 11.84HH34 pKa = 5.01RR35 pKa = 11.84PPDD38 pKa = 3.08RR39 pKa = 11.84RR40 pKa = 11.84RR41 pKa = 11.84RR42 pKa = 11.84GLCLQRR48 pKa = 11.84RR49 pKa = 11.84GRR51 pKa = 11.84AARR54 pKa = 11.84AHH56 pKa = 6.39RR57 pKa = 11.84PRR59 pKa = 11.84RR60 pKa = 11.84PAHH63 pKa = 6.79RR64 pKa = 11.84DD65 pKa = 2.86RR66 pKa = 11.84ARR68 pKa = 11.84RR69 pKa = 11.84PGSHH73 pKa = 6.11HH74 pKa = 6.75RR75 pKa = 11.84APLRR79 pKa = 11.84RR80 pKa = 11.84SPKK83 pKa = 9.72RR84 pKa = 11.84RR85 pKa = 11.84GQPRR89 pKa = 11.84GLYY92 pKa = 10.17AGWRR96 pKa = 11.84RR97 pKa = 11.84PANHH101 pKa = 7.13AEE103 pKa = 3.83PVRR106 pKa = 11.84RR107 pKa = 11.84RR108 pKa = 11.84RR109 pKa = 11.84RR110 pKa = 11.84PAPRR114 pKa = 11.84AAPLRR119 pKa = 11.84RR120 pKa = 11.84PGPPDD125 pKa = 3.12RR126 pKa = 11.84RR127 pKa = 11.84RR128 pKa = 11.84RR129 pKa = 11.84PLQPAQHH136 pKa = 6.64LDD138 pKa = 3.46LRR140 pKa = 11.84RR141 pKa = 11.84SRR143 pKa = 11.84QPPEE147 pKa = 3.48RR148 pKa = 11.84DD149 pKa = 3.34GPGRR153 pKa = 11.84HH154 pKa = 5.08HH155 pKa = 6.76HH156 pKa = 6.49HH157 pKa = 7.03RR158 pKa = 11.84AGSPQPHH165 pKa = 6.83RR166 pKa = 11.84PPDD169 pKa = 3.53HH170 pKa = 6.77GRR172 pKa = 11.84GQHH175 pKa = 6.22GAQLQQRR182 pKa = 11.84RR183 pKa = 11.84PPATDD188 pKa = 3.27HH189 pKa = 6.1PPEE192 pKa = 4.51RR193 pKa = 11.84RR194 pKa = 11.84AQRR197 pKa = 11.84NPLRR201 pKa = 11.84RR202 pKa = 11.84RR203 pKa = 11.84RR204 pKa = 11.84PHH206 pKa = 6.72RR207 pKa = 11.84AHH209 pKa = 6.87HH210 pKa = 6.45PPPGQQRR217 pKa = 11.84SRR219 pKa = 11.84ALRR222 pKa = 11.84IRR224 pKa = 11.84LRR226 pKa = 11.84RR227 pKa = 11.84ARR229 pKa = 11.84QPTT232 pKa = 3.36

Molecular weight: 27.68 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3593

0

3593

1297485

39

3779

361.1

39.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.453 ± 0.058

0.906 ± 0.013

5.336 ± 0.029

6.103 ± 0.044

3.407 ± 0.025

8.641 ± 0.044

2.028 ± 0.019

3.95 ± 0.029

2.126 ± 0.029

11.743 ± 0.063

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.842 ± 0.017

2.318 ± 0.028

5.483 ± 0.031

3.76 ± 0.027

8.237 ± 0.054

5.699 ± 0.04

4.462 ± 0.049

7.043 ± 0.036

1.442 ± 0.017

2.022 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski