Devosia limi DSM 17137

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Devosiaceae; Devosia; Devosia limi

Average proteome isoelectric point is 6.29

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3824 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0F5LVP1|A0A0F5LVP1_9RHIZ Flagellar motor protein MotA OS=Devosia limi DSM 17137 OX=1121477 GN=SAMN02745223_01446 PE=4 SV=1
MM1 pKa = 6.6NTSTIGIAVVLCSLSAALPALAGDD25 pKa = 3.97VRR27 pKa = 11.84AQLTPDD33 pKa = 5.08LIYY36 pKa = 10.7SHH38 pKa = 6.67CQAAGVGSQTEE49 pKa = 4.47STFMLPGGRR58 pKa = 11.84VTGTVLCTEE67 pKa = 4.75ADD69 pKa = 3.51LVAANMMAPTQYY81 pKa = 11.35GEE83 pKa = 5.59DD84 pKa = 3.93EE85 pKa = 5.67DD86 pKa = 6.74GDD88 pKa = 4.43DD89 pKa = 4.79DD90 pKa = 3.91NQARR94 pKa = 11.84RR95 pKa = 11.84GHH97 pKa = 7.07DD98 pKa = 3.94DD99 pKa = 3.21NHH101 pKa = 7.31DD102 pKa = 3.69DD103 pKa = 3.92

Molecular weight: 10.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0F5LW26|A0A0F5LW26_9RHIZ Uncharacterized protein OS=Devosia limi DSM 17137 OX=1121477 GN=VW29_02130 PE=3 SV=1
MM1 pKa = 7.7SKK3 pKa = 10.36RR4 pKa = 11.84FAYY7 pKa = 9.75RR8 pKa = 11.84ATMVALALASLSGPAFAQMQQDD30 pKa = 3.18RR31 pKa = 11.84AMAGGNANLAVTTDD45 pKa = 3.07IVNVRR50 pKa = 11.84KK51 pKa = 9.48GAGMRR56 pKa = 11.84FPVVDD61 pKa = 3.55VLPRR65 pKa = 11.84GAQVQIVRR73 pKa = 11.84CNSDD77 pKa = 3.22FCLVDD82 pKa = 3.29QDD84 pKa = 5.19GPSGWVAQQFLKK96 pKa = 10.87RR97 pKa = 11.84LILRR101 pKa = 4.16

Molecular weight: 10.95 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3824

0

3824

1172979

40

3450

306.7

33.14

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.587 ± 0.055

0.681 ± 0.01

5.665 ± 0.034

5.374 ± 0.036

3.831 ± 0.03

8.679 ± 0.041

1.968 ± 0.02

5.68 ± 0.027

3.041 ± 0.03

10.376 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.601 ± 0.02

2.768 ± 0.024

4.988 ± 0.025

3.262 ± 0.023

6.394 ± 0.044

5.434 ± 0.027

5.481 ± 0.032

7.656 ± 0.03

1.297 ± 0.016

2.238 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski