Youcai mosaic virus (YoMV)

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Virgaviridae; Tobamovirus

Average proteome isoelectric point is 6.55

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|Q66222|CAPSD_YOMV Capsid protein OS=Youcai mosaic virus OX=228578 GN=CP PE=2 SV=3
MM1 pKa = 7.52VYY3 pKa = 10.67NITSSNQYY11 pKa = 10.63QYY13 pKa = 10.8FAAMWAEE20 pKa = 4.06PTAMLNQCVSALSQSYY36 pKa = 7.22QTQAARR42 pKa = 11.84DD43 pKa = 3.67TVRR46 pKa = 11.84QQFSNLLSAIVTPNQRR62 pKa = 11.84FPEE65 pKa = 4.32AGYY68 pKa = 10.16RR69 pKa = 11.84VYY71 pKa = 10.85INSAVLKK78 pKa = 9.44PLYY81 pKa = 9.69EE82 pKa = 4.29SLMKK86 pKa = 10.92SFDD89 pKa = 3.23TRR91 pKa = 11.84NRR93 pKa = 11.84IIEE96 pKa = 4.26TEE98 pKa = 4.13EE99 pKa = 3.68EE100 pKa = 4.31SRR102 pKa = 11.84PSASEE107 pKa = 3.81VANATQRR114 pKa = 11.84VDD116 pKa = 3.42DD117 pKa = 3.9ATVAIRR123 pKa = 11.84SQIQLLLNEE132 pKa = 4.95LSNGHH137 pKa = 5.86GLMNRR142 pKa = 11.84AEE144 pKa = 4.44FEE146 pKa = 4.33VLLPWATAPATT157 pKa = 3.61

Molecular weight: 17.64 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|Q66222|CAPSD_YOMV Capsid protein OS=Youcai mosaic virus OX=228578 GN=CP PE=2 SV=3
MM1 pKa = 7.94SYY3 pKa = 10.28EE4 pKa = 4.08PKK6 pKa = 10.69VSDD9 pKa = 4.73FLALTKK15 pKa = 10.38KK16 pKa = 10.85EE17 pKa = 4.14EE18 pKa = 4.2ILPKK22 pKa = 10.55ALTRR26 pKa = 11.84LKK28 pKa = 9.72TVSISTKK35 pKa = 10.4DD36 pKa = 3.46VISVKK41 pKa = 10.08EE42 pKa = 4.16SEE44 pKa = 4.5SLCDD48 pKa = 3.89IDD50 pKa = 6.04LLVNVPLDD58 pKa = 3.17KK59 pKa = 10.78YY60 pKa = 10.67RR61 pKa = 11.84YY62 pKa = 8.15VGVLGVVFTGEE73 pKa = 3.77WLVPDD78 pKa = 4.61FVKK81 pKa = 10.99GGVTVSVIDD90 pKa = 4.22KK91 pKa = 10.23RR92 pKa = 11.84LEE94 pKa = 3.82NSKK97 pKa = 10.48EE98 pKa = 4.22CIIGTYY104 pKa = 9.64RR105 pKa = 11.84AAAKK109 pKa = 10.17DD110 pKa = 3.26RR111 pKa = 11.84RR112 pKa = 11.84FQFKK116 pKa = 10.22LVPNYY121 pKa = 9.44FVSVADD127 pKa = 4.32AKK129 pKa = 10.32RR130 pKa = 11.84KK131 pKa = 7.58PWQVHH136 pKa = 4.64VRR138 pKa = 11.84IQNLKK143 pKa = 9.94IEE145 pKa = 5.03AGWQPLALEE154 pKa = 4.52VVSVAMVTNNVVVKK168 pKa = 9.49GLRR171 pKa = 11.84EE172 pKa = 3.73KK173 pKa = 10.91VIAVNDD179 pKa = 4.06PNVEE183 pKa = 4.0GFEE186 pKa = 4.26GVVDD190 pKa = 4.18DD191 pKa = 5.83FVDD194 pKa = 3.91SVAAFKK200 pKa = 10.9AIDD203 pKa = 3.49SFRR206 pKa = 11.84KK207 pKa = 8.15KK208 pKa = 10.03KK209 pKa = 10.47KK210 pKa = 10.04RR211 pKa = 11.84IGGRR215 pKa = 11.84DD216 pKa = 3.46VNSNKK221 pKa = 9.53YY222 pKa = 8.94RR223 pKa = 11.84YY224 pKa = 9.6RR225 pKa = 11.84PEE227 pKa = 5.01RR228 pKa = 11.84YY229 pKa = 9.44AGPDD233 pKa = 2.87SLQYY237 pKa = 10.63KK238 pKa = 9.31EE239 pKa = 4.9EE240 pKa = 4.37NGLQHH245 pKa = 6.97HH246 pKa = 6.38EE247 pKa = 4.32LEE249 pKa = 4.52SVPVFRR255 pKa = 11.84SDD257 pKa = 2.84VGRR260 pKa = 11.84AHH262 pKa = 7.36SDD264 pKa = 2.78AA265 pKa = 5.51

Molecular weight: 29.86 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

2019

157

1597

673.0

76.34

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.33 ± 0.884

1.981 ± 0.609

6.241 ± 0.697

6.439 ± 0.207

5.052 ± 0.605

4.408 ± 0.482

2.13 ± 0.456

4.755 ± 0.121

7.083 ± 1.07

9.411 ± 0.692

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.179 ± 0.422

4.26 ± 0.557

3.814 ± 0.216

3.269 ± 0.801

5.25 ± 0.552

6.786 ± 0.58

5.745 ± 0.83

8.866 ± 1.668

1.189 ± 0.019

3.764 ± 0.136
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski