Martelella endophytica

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Aurantimonadaceae; Martelella

Average proteome isoelectric point is 6.1

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4020 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0D5LKK0|A0A0D5LKK0_9RHIZ Transcriptional regulator OS=Martelella endophytica OX=1486262 GN=TM49_00245 PE=4 SV=1
MM1 pKa = 8.23DD2 pKa = 4.12SRR4 pKa = 11.84KK5 pKa = 9.92FSDD8 pKa = 3.36SNAVFFKK15 pKa = 10.79RR16 pKa = 11.84KK17 pKa = 9.57GSLITQTALSGVFAIGAVMLASSSSFSADD46 pKa = 3.3RR47 pKa = 11.84SWDD50 pKa = 3.61LFPTNGNFVVGSNWSGNTAPGAADD74 pKa = 3.47NANIGASFNSPWLDD88 pKa = 3.03QTYY91 pKa = 10.09SVQSVSVSGGGSFTIRR107 pKa = 11.84NGGNLTADD115 pKa = 3.31TMTVGGVLSSITIASGGAFNGQVSATGGTFTNSGTVNGAASISGGIATNSGSVTGMVTNSSIGLVLVPGFTNASGGSIGGLTNSGIAVNEE205 pKa = 3.96NGASIGTLSNTNGTFSNSGTVTGTTSISGGVVTNNSDD242 pKa = 3.71GVFEE246 pKa = 5.15GATSMTGGITTNNGTINGATTVSGALTSFTNNGTINNTLGITSGIVTNNGSVTGMVTNSSIGIIVAPGFTNASGGSIGGLANSGIAVNEE335 pKa = 3.96NGASIGTLSNTNGTFSNSGTVTGTTSISGGVVTNNSDD372 pKa = 3.71GVFEE376 pKa = 5.15GATSMTGGITTNNGTINGATTVSGALTSFTNNGTINNTLGITSGIVTNNGSVTGMVTNSSIGIVVAPGFTNAGGGSIGGLSNSGIAVNEE465 pKa = 3.96NGASIGTLSNTNGTFSNSGTVTGTTSISGGVVTNNSDD502 pKa = 3.71GVFEE506 pKa = 5.15GATSMTGGILTNNGSIDD523 pKa = 3.58NTLGITGGVATNNGTVAGMVTNSSFGLVLVPGFTNASGGSIGGLTNSGIAVNEE576 pKa = 3.92NGGTIGTLSNTGGVFTNSGTVTGTTTVSGGVVTNTSDD613 pKa = 3.8GVFEE617 pKa = 5.16GATSMTGGITTNNGTINGATTVSGVATTFTNTGTIDD653 pKa = 3.33NTLGVTGGIVTNTGTVTGATGVSGGLLTNTGTIDD687 pKa = 3.39NTLGVAGGVVINTGTVTGATGVSAGLLTNTGTIDD721 pKa = 3.36NTLGITGGVVVNAGTVTGAAGISGGLLTNTGTLEE755 pKa = 3.98STLDD759 pKa = 3.47VLGGFVANEE768 pKa = 3.77AGGDD772 pKa = 3.89VVGLTTIYY780 pKa = 11.04DD781 pKa = 3.69GDD783 pKa = 3.9VTNGLISAANFGTVINYY800 pKa = 7.49STGDD804 pKa = 3.22INSNGFTNGSFGRR817 pKa = 11.84TEE819 pKa = 3.68ALVNHH824 pKa = 6.87GSSVNLIGGSIGTATNNAGTFTNSGSIDD852 pKa = 3.31GALVVNGGTVDD863 pKa = 3.4NNGNGVLNNGTVGGLTTISNDD884 pKa = 3.22GLVTNSGTLADD895 pKa = 4.26VVNGSYY901 pKa = 10.73AGGSGSGFVNQAGGVAGALTNSGGATNEE929 pKa = 3.96AGGTLASVLNTAGVFTNAGTVTGTLDD955 pKa = 3.47VTGGSADD962 pKa = 3.52NTGSVAGLTTISNDD976 pKa = 3.14GVATNSGTLADD987 pKa = 3.9VVNGSFAGGSGFGFVNQSGGVAGALTNSGGATNMAGATLASVTNDD1032 pKa = 2.51AGYY1035 pKa = 7.77FTNAGTVSGSVAVNAGTAEE1054 pKa = 4.01NTGLIGGAVDD1064 pKa = 3.2IADD1067 pKa = 4.22NGTMTNSGQIDD1078 pKa = 4.38GLTTNAGLFATTGTLNGGLVNSGIASIRR1106 pKa = 11.84GTINGAIEE1114 pKa = 4.11NSSLLDD1120 pKa = 3.47DD1121 pKa = 4.32TFSLTGDD1128 pKa = 3.62LVGNGTLSNQGTFTAWGGYY1147 pKa = 7.06TISGIDD1153 pKa = 3.36IDD1155 pKa = 5.34NSGTLNASNYY1165 pKa = 8.29KK1166 pKa = 9.52TDD1168 pKa = 3.21TGALKK1173 pKa = 9.33TAGTSATTLTVDD1185 pKa = 3.67SDD1187 pKa = 3.38ITRR1190 pKa = 11.84GGRR1193 pKa = 11.84IALGTYY1199 pKa = 10.75ADD1201 pKa = 3.88TTTDD1205 pKa = 3.57QIQVTGDD1212 pKa = 3.48FSGGDD1217 pKa = 3.65YY1218 pKa = 11.35DD1219 pKa = 4.59LALYY1223 pKa = 9.24GLNYY1227 pKa = 10.22LDD1229 pKa = 3.91TPEE1232 pKa = 4.25EE1233 pKa = 4.08RR1234 pKa = 11.84TLITIDD1240 pKa = 3.38GTYY1243 pKa = 9.57SASVGDD1249 pKa = 4.31VYY1251 pKa = 11.67GLGNTANPLIVNSVRR1266 pKa = 11.84EE1267 pKa = 4.16TANSVILTTALDD1279 pKa = 3.6MTPISGTLGGIYY1291 pKa = 8.91ATQAFTGITTNRR1303 pKa = 11.84FDD1305 pKa = 4.06DD1306 pKa = 4.28SYY1308 pKa = 10.73VTAVDD1313 pKa = 4.16GAGKK1317 pKa = 10.11GCSPGTYY1324 pKa = 8.74TRR1326 pKa = 11.84MNGGSLNTASTASSAGSVSAKK1347 pKa = 8.98TDD1349 pKa = 3.04SDD1351 pKa = 3.42ISFGGVEE1358 pKa = 4.25LGLDD1362 pKa = 3.69YY1363 pKa = 11.71GCFDD1367 pKa = 4.15LGKK1370 pKa = 10.65AGGQVNFGLLGGLNSGSVSSNEE1392 pKa = 3.77TVAGIGYY1399 pKa = 9.46SGQSTFDD1406 pKa = 3.04QQYY1409 pKa = 7.79FGGYY1413 pKa = 9.92ASYY1416 pKa = 10.9LAGPFVAQLRR1426 pKa = 11.84TTYY1429 pKa = 10.79GRR1431 pKa = 11.84TAYY1434 pKa = 10.39DD1435 pKa = 3.34IDD1437 pKa = 3.68QMRR1440 pKa = 11.84TASGLSTSVFDD1451 pKa = 5.28QDD1453 pKa = 5.19GFDD1456 pKa = 3.83ANQYY1460 pKa = 6.84TASGYY1465 pKa = 9.92LAYY1468 pKa = 9.99GFNMDD1473 pKa = 4.94RR1474 pKa = 11.84FTLLPSIGLSYY1485 pKa = 11.08SNSVFNDD1492 pKa = 3.43DD1493 pKa = 4.11LQVASGSPAQISFDD1507 pKa = 4.13DD1508 pKa = 3.91MEE1510 pKa = 4.68TLVGSIGLAASASFTLDD1527 pKa = 3.46DD1528 pKa = 4.18NRR1530 pKa = 11.84GTIQPFLAGTYY1541 pKa = 9.82YY1542 pKa = 11.34NNFADD1547 pKa = 5.72DD1548 pKa = 3.41PTAYY1552 pKa = 9.51YY1553 pKa = 10.45VSSAGIRR1560 pKa = 11.84TPINTSTVDD1569 pKa = 3.17NYY1571 pKa = 11.75GEE1573 pKa = 3.9ISVGFDD1579 pKa = 3.2YY1580 pKa = 9.06LTPPTSVLRR1589 pKa = 11.84QVSGQVRR1596 pKa = 11.84ADD1598 pKa = 3.7FPVGKK1603 pKa = 9.41DD1604 pKa = 3.23VSGAQVSLSMRR1615 pKa = 11.84AQFF1618 pKa = 4.51

Molecular weight: 157.68 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0D5LPK4|A0A0D5LPK4_9RHIZ HTH marR-type domain-containing protein OS=Martelella endophytica OX=1486262 GN=TM49_11500 PE=4 SV=1
MM1 pKa = 7.58PRR3 pKa = 11.84QGPGNPGFSRR13 pKa = 11.84LTADD17 pKa = 3.72RR18 pKa = 11.84ASRR21 pKa = 11.84AASGARR27 pKa = 11.84RR28 pKa = 11.84RR29 pKa = 11.84RR30 pKa = 11.84AGGRR34 pKa = 11.84HH35 pKa = 3.97SRR37 pKa = 11.84ARR39 pKa = 11.84DD40 pKa = 3.18RR41 pKa = 11.84RR42 pKa = 11.84RR43 pKa = 11.84RR44 pKa = 11.84SPWRR48 pKa = 11.84RR49 pKa = 11.84RR50 pKa = 11.84LPASARR56 pKa = 11.84SANRR60 pKa = 11.84ARR62 pKa = 11.84APRR65 pKa = 3.86

Molecular weight: 7.36 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4020

0

4020

1282831

29

2827

319.1

34.67

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.013 ± 0.05

0.78 ± 0.01

5.939 ± 0.033

6.047 ± 0.038

4.058 ± 0.027

8.611 ± 0.055

1.967 ± 0.017

5.64 ± 0.027

3.388 ± 0.031

9.887 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.712 ± 0.019

2.832 ± 0.025

4.943 ± 0.027

2.767 ± 0.022

6.447 ± 0.042

5.491 ± 0.032

5.443 ± 0.031

7.301 ± 0.034

1.293 ± 0.017

2.442 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski