Vallicoccus soli

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Motilibacterales; Vallicoccaceae; Vallicoccus

Average proteome isoelectric point is 6.44

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3658 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3A3ZCU1|A0A3A3ZCU1_9ACTN GAF domain-containing protein OS=Vallicoccus soli OX=2339232 GN=D5H78_18240 PE=4 SV=1
MM1 pKa = 7.72GSRR4 pKa = 11.84TNRR7 pKa = 11.84PAALAAGVLGLSLVLTACGSDD28 pKa = 2.94NGGDD32 pKa = 3.69DD33 pKa = 3.72TASGGSGGGSGADD46 pKa = 3.16CSAYY50 pKa = 9.76EE51 pKa = 4.84QYY53 pKa = 9.6TQDD56 pKa = 3.98FPGIDD61 pKa = 3.38GKK63 pKa = 8.7TVSVYY68 pKa = 10.13TSIVTPEE75 pKa = 4.34DD76 pKa = 3.53QPHH79 pKa = 6.74LDD81 pKa = 3.15SYY83 pKa = 11.92AAFEE87 pKa = 4.43EE88 pKa = 4.86CTGVDD93 pKa = 3.37VQYY96 pKa = 11.04EE97 pKa = 4.03GDD99 pKa = 3.56KK100 pKa = 11.34AFEE103 pKa = 4.06AQVLVRR109 pKa = 11.84AKK111 pKa = 10.57AGNAPDD117 pKa = 3.46IAYY120 pKa = 9.95VPQPGLLQQLVATGAAVPAPEE141 pKa = 3.72QTAANVDD148 pKa = 3.76EE149 pKa = 5.69FFGEE153 pKa = 4.03DD154 pKa = 2.72WKK156 pKa = 11.46GYY158 pKa = 10.47GSVDD162 pKa = 3.33GQFYY166 pKa = 10.39AAPLGANVKK175 pKa = 10.29SFVWYY180 pKa = 10.25SPSEE184 pKa = 4.2FEE186 pKa = 4.42DD187 pKa = 3.08SGYY190 pKa = 10.79EE191 pKa = 4.01VPTTLDD197 pKa = 3.43EE198 pKa = 4.81LKK200 pKa = 10.88SLTDD204 pKa = 3.38QMVADD209 pKa = 5.65GKK211 pKa = 10.73VPWCAGIASGEE222 pKa = 4.07ATGWPVTDD230 pKa = 3.15WMEE233 pKa = 5.81DD234 pKa = 2.78MMLRR238 pKa = 11.84LNGPEE243 pKa = 5.81VYY245 pKa = 10.11DD246 pKa = 2.92QWVNHH251 pKa = 6.9EE252 pKa = 4.35IPFNGPEE259 pKa = 3.82STAALDD265 pKa = 4.35AVGEE269 pKa = 4.11YY270 pKa = 10.41LKK272 pKa = 11.08NPEE275 pKa = 4.41YY276 pKa = 11.46VNGGYY281 pKa = 11.09GDD283 pKa = 3.7VTTIATTTFQDD294 pKa = 3.06GGLPIIDD301 pKa = 4.33GACSLHH307 pKa = 6.07RR308 pKa = 11.84QAGFYY313 pKa = 9.29AANWPEE319 pKa = 3.99GTEE322 pKa = 3.98VAEE325 pKa = 5.08DD326 pKa = 3.8GDD328 pKa = 3.98VFAFYY333 pKa = 10.95LPGQTAEE340 pKa = 4.41DD341 pKa = 4.06RR342 pKa = 11.84PVLGGGEE349 pKa = 4.04FVLAFDD355 pKa = 5.84DD356 pKa = 4.14RR357 pKa = 11.84PEE359 pKa = 3.96VQAFQTFLSSDD370 pKa = 2.5TWANEE375 pKa = 3.67KK376 pKa = 10.68AIATPQGGWVSANSGLEE393 pKa = 3.67VDD395 pKa = 4.66NLVSPIDD402 pKa = 3.62QLSAEE407 pKa = 4.47ILQDD411 pKa = 3.4PNAVFRR417 pKa = 11.84FDD419 pKa = 5.93GSDD422 pKa = 3.44QMPGAVGADD431 pKa = 3.73AFWKK435 pKa = 10.38QATNWITGQSTQEE448 pKa = 4.02TVDD451 pKa = 3.93KK452 pKa = 11.25IEE454 pKa = 4.4AAWPASS460 pKa = 3.41

Molecular weight: 48.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3A3YTM2|A0A3A3YTM2_9ACTN Iron-sulfur protein OS=Vallicoccus soli OX=2339232 GN=D5H78_13320 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84SKK15 pKa = 8.58THH17 pKa = 5.46GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILAARR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 9.75GRR40 pKa = 11.84ASLSAA45 pKa = 3.83

Molecular weight: 5.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3658

0

3658

1198445

29

1814

327.6

34.56

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

15.525 ± 0.077

0.688 ± 0.01

6.11 ± 0.03

5.652 ± 0.04

2.155 ± 0.027

10.35 ± 0.041

2.012 ± 0.021

1.698 ± 0.031

1.119 ± 0.021

11.139 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.336 ± 0.014

1.09 ± 0.018

6.506 ± 0.034

2.545 ± 0.021

9.159 ± 0.053

4.228 ± 0.03

5.177 ± 0.03

10.338 ± 0.037

1.433 ± 0.015

1.741 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski