Globicatella sp. HMSC072A10

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Aerococcaceae; Globicatella; unclassified Globicatella

Average proteome isoelectric point is 5.93

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2027 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1E8YNY5|A0A1E8YNY5_9LACT Uncharacterized protein OS=Globicatella sp. HMSC072A10 OX=1739315 GN=HMPREF2811_05820 PE=4 SV=1
MM1 pKa = 7.74AEE3 pKa = 3.91ALIVFASLTGNTEE16 pKa = 3.52EE17 pKa = 4.44MADD20 pKa = 3.21IVAEE24 pKa = 3.94RR25 pKa = 11.84LEE27 pKa = 3.93EE28 pKa = 4.46HH29 pKa = 7.41DD30 pKa = 3.96INVEE34 pKa = 4.44IVDD37 pKa = 3.97CMQADD42 pKa = 3.23AHH44 pKa = 7.01DD45 pKa = 4.16FLDD48 pKa = 3.99YY49 pKa = 10.49DD50 pKa = 3.37ICIIGSYY57 pKa = 9.51TYY59 pKa = 10.89GVDD62 pKa = 3.5GVLPDD67 pKa = 4.37EE68 pKa = 5.28MIDD71 pKa = 3.47FHH73 pKa = 8.86KK74 pKa = 10.84EE75 pKa = 3.51LGEE78 pKa = 4.32LDD80 pKa = 3.43LTGKK84 pKa = 10.03VFGVFGSGDD93 pKa = 3.31DD94 pKa = 4.02FYY96 pKa = 11.35DD97 pKa = 3.85YY98 pKa = 11.12FCAAVDD104 pKa = 3.86FFEE107 pKa = 4.48NQFVATGATKK117 pKa = 10.29GGEE120 pKa = 4.23SVKK123 pKa = 10.75VNLNAEE129 pKa = 4.37DD130 pKa = 4.0EE131 pKa = 4.87DD132 pKa = 4.45IEE134 pKa = 4.41NLNALADD141 pKa = 5.1AIASHH146 pKa = 6.89FEE148 pKa = 4.06SS149 pKa = 4.21

Molecular weight: 16.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1E8YTB4|A0A1E8YTB4_9LACT tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Globicatella sp. HMSC072A10 OX=1739315 GN=mnmG PE=3 SV=1
MM1 pKa = 7.36KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 9.67QPKK8 pKa = 9.36KK9 pKa = 7.48RR10 pKa = 11.84TRR12 pKa = 11.84KK13 pKa = 9.06KK14 pKa = 8.41VHH16 pKa = 5.85GFRR19 pKa = 11.84KK20 pKa = 10.01RR21 pKa = 11.84MSTKK25 pKa = 9.36NGRR28 pKa = 11.84RR29 pKa = 11.84VLRR32 pKa = 11.84KK33 pKa = 9.13RR34 pKa = 11.84RR35 pKa = 11.84QKK37 pKa = 10.68GRR39 pKa = 11.84AKK41 pKa = 10.7LSAA44 pKa = 3.92

Molecular weight: 5.41 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2027

0

2027

657366

37

2283

324.3

36.59

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.934 ± 0.06

0.524 ± 0.013

5.473 ± 0.045

7.49 ± 0.066

4.446 ± 0.04

6.231 ± 0.049

2.018 ± 0.025

8.08 ± 0.058

6.222 ± 0.045

9.874 ± 0.06

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.689 ± 0.023

5.135 ± 0.038

3.454 ± 0.024

4.424 ± 0.049

3.775 ± 0.042

5.757 ± 0.043

5.703 ± 0.044

6.8 ± 0.047

0.965 ± 0.02

4.005 ± 0.035
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski