Orientia chuto str. Dubai

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Orientia; Orientia chuto

Average proteome isoelectric point is 7.46

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1067 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0F3MGX4|A0A0F3MGX4_9RICK Uncharacterized protein OS=Orientia chuto str. Dubai OX=1359168 GN=OCHUTO_1021 PE=4 SV=1
MM1 pKa = 7.81IYY3 pKa = 10.71FLMHH7 pKa = 5.16MRR9 pKa = 11.84MYY11 pKa = 9.95TIEE14 pKa = 4.18SSASLEE20 pKa = 4.1MQQEE24 pKa = 3.69DD25 pKa = 5.22DD26 pKa = 3.15IFYY29 pKa = 10.78DD30 pKa = 3.54AFEE33 pKa = 5.79DD34 pKa = 4.04IPNEE38 pKa = 4.11STDD41 pKa = 3.5VSDD44 pKa = 6.07AEE46 pKa = 4.36MKK48 pKa = 10.93VLGNVDD54 pKa = 4.31LSCFDD59 pKa = 3.42TRR61 pKa = 11.84GVV63 pKa = 3.27

Molecular weight: 7.3 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0F3MN45|A0A0F3MN45_9RICK TCP-1/cpn60 chaperonin family protein OS=Orientia chuto str. Dubai OX=1359168 GN=OCHUTO_0639 PE=4 SV=1
MM1 pKa = 7.13YY2 pKa = 10.08SSKK5 pKa = 10.5SGHH8 pKa = 6.58LEE10 pKa = 3.85QPEE13 pKa = 4.26KK14 pKa = 9.99TWRR17 pKa = 11.84KK18 pKa = 7.89VCARR22 pKa = 11.84RR23 pKa = 11.84HH24 pKa = 4.24RR25 pKa = 11.84HH26 pKa = 5.41RR27 pKa = 11.84KK28 pKa = 8.49FKK30 pKa = 9.44NTQPRR35 pKa = 11.84RR36 pKa = 11.84TFASCMADD44 pKa = 2.97AGAGQYY50 pKa = 10.36IIGIVLIIMTQNQQVFMLEE69 pKa = 4.22LVV71 pKa = 3.47

Molecular weight: 8.29 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1067

0

1067

267194

28

1959

250.4

28.31

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.192 ± 0.071

1.417 ± 0.038

4.594 ± 0.055

5.203 ± 0.072

4.456 ± 0.059

4.988 ± 0.063

2.028 ± 0.033

10.696 ± 0.097

7.84 ± 0.079

10.203 ± 0.067

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.146 ± 0.04

6.938 ± 0.076

2.905 ± 0.043

4.085 ± 0.06

3.292 ± 0.048

7.486 ± 0.069

4.994 ± 0.055

5.708 ± 0.061

0.805 ± 0.026

4.022 ± 0.055
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski