Burkholderia dabaoshanensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Trinickia

Average proteome isoelectric point is 6.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6323 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2N7VNZ1|A0A2N7VNZ1_9BURK DNA-deoxyinosine glycosylase OS=Burkholderia dabaoshanensis OX=564714 GN=C0Z18_15985 PE=4 SV=1
MM1 pKa = 7.63SDD3 pKa = 3.45VIEE6 pKa = 4.66FKK8 pKa = 10.75SWVCVICGWVYY19 pKa = 11.07NEE21 pKa = 4.58EE22 pKa = 3.95EE23 pKa = 4.29GLPDD27 pKa = 3.52EE28 pKa = 5.75GIAPGTRR35 pKa = 11.84FADD38 pKa = 3.32IPEE41 pKa = 4.21DD42 pKa = 3.69WRR44 pKa = 11.84CPLCDD49 pKa = 3.39VSKK52 pKa = 11.62GEE54 pKa = 3.91FAAVEE59 pKa = 4.23FF60 pKa = 4.64

Molecular weight: 6.76 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2N7VSI3|A0A2N7VSI3_9BURK Uncharacterized protein OS=Burkholderia dabaoshanensis OX=564714 GN=C0Z18_11900 PE=4 SV=1
MM1 pKa = 7.62HH2 pKa = 7.1KK3 pKa = 10.37RR4 pKa = 11.84LTFRR8 pKa = 11.84HH9 pKa = 5.6SRR11 pKa = 11.84PPAALNPARR20 pKa = 11.84SLRR23 pKa = 11.84RR24 pKa = 11.84TPARR28 pKa = 11.84ALRR31 pKa = 11.84HH32 pKa = 4.74HH33 pKa = 7.4AARR36 pKa = 11.84AVGLSRR42 pKa = 11.84RR43 pKa = 11.84GTAPAHH49 pKa = 4.95QQQADD54 pKa = 3.52GSLRR58 pKa = 11.84AWLHH62 pKa = 5.93AVFSMLRR69 pKa = 11.84SRR71 pKa = 11.84TRR73 pKa = 11.84ARR75 pKa = 11.84RR76 pKa = 11.84VLLRR80 pKa = 11.84GLLRR84 pKa = 11.84HH85 pKa = 5.68TKK87 pKa = 9.96ARR89 pKa = 11.84RR90 pKa = 11.84AALAAAQRR98 pKa = 11.84AAAVSNRR105 pKa = 11.84RR106 pKa = 11.84PRR108 pKa = 11.84RR109 pKa = 11.84LSASAGWFAFAARR122 pKa = 4.17

Molecular weight: 13.66 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6323

0

6323

2062746

12

4999

326.2

35.38

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.229 ± 0.048

0.959 ± 0.011

5.406 ± 0.022

5.28 ± 0.027

3.609 ± 0.019

8.135 ± 0.031

2.321 ± 0.014

4.565 ± 0.023

2.915 ± 0.027

10.124 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.309 ± 0.013

2.643 ± 0.021

5.123 ± 0.024

3.502 ± 0.021

7.313 ± 0.038

5.745 ± 0.028

5.361 ± 0.026

7.667 ± 0.026

1.381 ± 0.013

2.413 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski