Kocuria soli

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Micrococcaceae; Kocuria

Average proteome isoelectric point is 5.96

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2527 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3N3ZRM0|A0A3N3ZRM0_9MICC Uncharacterized protein OS=Kocuria soli OX=2485125 GN=EDL96_04070 PE=4 SV=1
MM1 pKa = 7.75DD2 pKa = 5.29HH3 pKa = 7.15GSGGMAGHH11 pKa = 6.38NPEE14 pKa = 5.04GGPPPEE20 pKa = 5.34GIEE23 pKa = 4.04TAPEE27 pKa = 3.44PTYY30 pKa = 10.55PVDD33 pKa = 3.52STVVLTADD41 pKa = 4.42HH42 pKa = 6.44MPGMAGSEE50 pKa = 4.03ATITGAFDD58 pKa = 3.03TTAYY62 pKa = 9.79SVSYY66 pKa = 9.71TPTDD70 pKa = 3.11GGEE73 pKa = 3.88PVVDD77 pKa = 4.16HH78 pKa = 6.48KK79 pKa = 10.95WVVHH83 pKa = 6.32EE84 pKa = 4.16EE85 pKa = 4.2LEE87 pKa = 4.74DD88 pKa = 4.12PGEE91 pKa = 4.36APLPAGTEE99 pKa = 4.1VVLNADD105 pKa = 4.44HH106 pKa = 6.43MPGMDD111 pKa = 3.35GAEE114 pKa = 3.98ATIEE118 pKa = 4.15SSTQEE123 pKa = 3.85TVYY126 pKa = 10.49MVDD129 pKa = 3.23TTIDD133 pKa = 3.39GMEE136 pKa = 4.15MTNHH140 pKa = 5.01KK141 pKa = 9.85WFVEE145 pKa = 4.26SEE147 pKa = 4.22LQPAEE152 pKa = 3.95

Molecular weight: 16.0 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3N3ZS15|A0A3N3ZS15_9MICC BCCT family transporter OS=Kocuria soli OX=2485125 GN=EDL96_07165 PE=3 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 10.04KK16 pKa = 8.86HH17 pKa = 4.36GFRR20 pKa = 11.84ARR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILSARR35 pKa = 11.84RR36 pKa = 11.84SKK38 pKa = 10.82GRR40 pKa = 11.84ASLSAA45 pKa = 3.83

Molecular weight: 5.2 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2527

0

2527

857169

32

1974

339.2

36.53

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.121 ± 0.055

0.644 ± 0.013

6.251 ± 0.045

6.234 ± 0.045

2.922 ± 0.032

8.916 ± 0.043

2.24 ± 0.022

3.93 ± 0.033

2.338 ± 0.033

9.814 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.074 ± 0.021

2.205 ± 0.024

5.496 ± 0.034

3.363 ± 0.027

7.119 ± 0.051

5.713 ± 0.032

6.187 ± 0.033

8.986 ± 0.044

1.521 ± 0.02

1.927 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski