Albibacterium bauzanense

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Albibacterium

Average proteome isoelectric point is 6.38

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2712 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4R1LXS9|A0A4R1LXS9_9SPHI D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (Penicillin-binding protein 4) OS=Albibacterium bauzanense OX=653929 GN=C8N28_1971 PE=3 SV=1
MM1 pKa = 7.67KK2 pKa = 10.49KK3 pKa = 10.02PLLFLCALLMIGLTACDD20 pKa = 4.22DD21 pKa = 4.15TNDD24 pKa = 3.61VQPTYY29 pKa = 10.44EE30 pKa = 4.18NPNTAFVVTLDD41 pKa = 3.29PSGWKK46 pKa = 9.93RR47 pKa = 11.84ISNAKK52 pKa = 9.43IAFDD56 pKa = 4.56IPLKK60 pKa = 10.93DD61 pKa = 3.24LTEE64 pKa = 4.29YY65 pKa = 11.29YY66 pKa = 10.71LLQGGVAVALSFDD79 pKa = 4.86DD80 pKa = 3.81EE81 pKa = 4.7DD82 pKa = 4.58SYY84 pKa = 11.95EE85 pKa = 4.1ILPTTSEE92 pKa = 3.91GLAYY96 pKa = 10.29SVNYY100 pKa = 10.03AIGWVTIYY108 pKa = 11.16ADD110 pKa = 5.47DD111 pKa = 4.65PLADD115 pKa = 4.89DD116 pKa = 5.17GVTTTFPTGDD126 pKa = 3.8IIAKK130 pKa = 9.89IILSTTDD137 pKa = 3.2YY138 pKa = 11.41LDD140 pKa = 3.44YY141 pKa = 11.3QGMFNSPEE149 pKa = 4.01VKK151 pKa = 10.5FKK153 pKa = 10.37QLKK156 pKa = 8.94

Molecular weight: 17.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4R1M1D9|A0A4R1M1D9_9SPHI Integrase/recombinase XerC OS=Albibacterium bauzanense OX=653929 GN=C8N28_0772 PE=4 SV=1
MM1 pKa = 7.67NSRR4 pKa = 11.84KK5 pKa = 10.25SIILASAALILMTSLSSCEE24 pKa = 3.87LVTGIFKK31 pKa = 10.79GGMYY35 pKa = 10.42FGIALVVIVIALIIWLVSRR54 pKa = 11.84IGKK57 pKa = 9.36RR58 pKa = 3.12

Molecular weight: 6.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2712

0

2712

940648

30

2900

346.8

39.0

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.836 ± 0.044

0.705 ± 0.014

5.424 ± 0.032

6.383 ± 0.041

4.991 ± 0.034

6.644 ± 0.042

1.805 ± 0.021

8.196 ± 0.045

6.974 ± 0.039

9.68 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.273 ± 0.021

5.735 ± 0.039

3.634 ± 0.023

3.628 ± 0.027

3.895 ± 0.029

6.773 ± 0.032

5.283 ± 0.034

6.121 ± 0.034

1.094 ± 0.017

3.927 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski