Maize Iranian mosaic nucleorhabdovirus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Nucleorhabdovirus

Average proteome isoelectric point is 6.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B5FX46|B5FX46_9RHAB Large structural protein OS=Maize Iranian mosaic nucleorhabdovirus OX=348823 GN=L PE=4 SV=1
MM1 pKa = 7.19ATSFLLLLSLSSILAISATSAPALTSGRR29 pKa = 11.84IPRR32 pKa = 11.84DD33 pKa = 3.48EE34 pKa = 4.82EE35 pKa = 4.03PSSDD39 pKa = 4.43KK40 pKa = 11.14GDD42 pKa = 3.45SDD44 pKa = 5.46LYY46 pKa = 10.56PLYY49 pKa = 10.72EE50 pKa = 4.59CGKK53 pKa = 9.3EE54 pKa = 4.22GTGVPITSWYY64 pKa = 8.14GACRR68 pKa = 11.84GACSMASNSTEE79 pKa = 3.97VVAEE83 pKa = 4.01IYY85 pKa = 10.23YY86 pKa = 10.79RR87 pKa = 11.84NDD89 pKa = 2.83SVGYY93 pKa = 9.8IDD95 pKa = 4.01VLSVRR100 pKa = 11.84TTEE103 pKa = 3.87IKK105 pKa = 9.38KK106 pKa = 8.25TSHH109 pKa = 4.34VTWYY113 pKa = 9.65GACDD117 pKa = 3.38EE118 pKa = 4.3EE119 pKa = 5.06TIVGANSLAPEE130 pKa = 4.21YY131 pKa = 10.32IIEE134 pKa = 3.92QSIEE138 pKa = 3.99FLHH141 pKa = 6.8SGLDD145 pKa = 3.29SWQYY149 pKa = 9.94GADD152 pKa = 3.06IHH154 pKa = 6.42VHH156 pKa = 5.18DD157 pKa = 5.45TIGFPDD163 pKa = 4.86CDD165 pKa = 3.9YY166 pKa = 11.75LDD168 pKa = 4.58DD169 pKa = 4.97KK170 pKa = 11.82NNEE173 pKa = 3.33GWRR176 pKa = 11.84FIITKK181 pKa = 10.08RR182 pKa = 11.84AIEE185 pKa = 4.38LKK187 pKa = 10.54SDD189 pKa = 3.2IAGEE193 pKa = 4.45GYY195 pKa = 10.04IVDD198 pKa = 4.36PDD200 pKa = 3.69LGYY203 pKa = 11.12VFPVSDD209 pKa = 4.55GIGRR213 pKa = 11.84GKK215 pKa = 10.16FWYY218 pKa = 8.42IWKK221 pKa = 10.16SSSVPSGGCFFKK233 pKa = 11.06SAGTGNCTLLMDD245 pKa = 4.65TFTYY249 pKa = 10.26SCPEE253 pKa = 3.97LNVAFSAKK261 pKa = 10.31VNTKK265 pKa = 10.83LEE267 pKa = 4.41GTCVGDD273 pKa = 4.8LNISSDD279 pKa = 3.63GVSYY283 pKa = 11.17ALRR286 pKa = 11.84SQQSTGSVSSALINLWHH303 pKa = 6.25QSQEE307 pKa = 3.86AVTQQLILVINDD319 pKa = 3.54ALGKK323 pKa = 10.03IEE325 pKa = 4.86SSYY328 pKa = 11.64CEE330 pKa = 3.95ASCDD334 pKa = 3.39LTEE337 pKa = 4.0ALFYY341 pKa = 10.77RR342 pKa = 11.84VTDD345 pKa = 3.64NPAVVEE351 pKa = 4.51TPVGPWLPSLSKK363 pKa = 10.7GKK365 pKa = 10.71VSIIPCQSEE374 pKa = 3.85QQLIIILPIEE384 pKa = 3.95ICYY387 pKa = 10.18EE388 pKa = 3.76PFMLKK393 pKa = 10.11VKK395 pKa = 9.82SLKK398 pKa = 9.84TGEE401 pKa = 4.41TFWWLPSHH409 pKa = 5.91SHH411 pKa = 4.64VTSSTSCRR419 pKa = 11.84SIATEE424 pKa = 3.59EE425 pKa = 4.4VEE427 pKa = 4.95FQGEE431 pKa = 4.33LKK433 pKa = 10.75KK434 pKa = 10.61PLTFEE439 pKa = 4.61FWRR442 pKa = 11.84GMYY445 pKa = 10.29LLPYY449 pKa = 9.05PYY451 pKa = 9.65NGSGTWIDD459 pKa = 3.49NPGTHH464 pKa = 6.11IHH466 pKa = 7.04RR467 pKa = 11.84SSKK470 pKa = 9.23WFPSINQLSYY480 pKa = 11.1SVPIKK485 pKa = 10.75LPLITKK491 pKa = 7.95EE492 pKa = 3.78IRR494 pKa = 11.84KK495 pKa = 8.68HH496 pKa = 4.24VQQTVVSIGGFSNITSHH513 pKa = 7.74PITEE517 pKa = 5.15GIWTALSTAGLIIGKK532 pKa = 7.41TAARR536 pKa = 11.84VVMWWSEE543 pKa = 3.92LEE545 pKa = 4.23EE546 pKa = 4.25TVKK549 pKa = 11.04GYY551 pKa = 8.25VTLAGGVIISLLVGYY566 pKa = 10.71LMLKK570 pKa = 9.79TILLTRR576 pKa = 11.84RR577 pKa = 11.84PSYY580 pKa = 10.16SAVPRR585 pKa = 11.84EE586 pKa = 4.41VNWITPAKK594 pKa = 10.22

Molecular weight: 65.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|B5FX42|B5FX42_9RHAB Phosphoprotein OS=Maize Iranian mosaic nucleorhabdovirus OX=348823 GN=P PE=4 SV=1
MM1 pKa = 7.65ASITIPVEE9 pKa = 3.91QVTKK13 pKa = 10.7FSDD16 pKa = 3.71DD17 pKa = 3.69VKK19 pKa = 11.44SLTQKK24 pKa = 10.69ASEE27 pKa = 4.25IPSSKK32 pKa = 10.64SIIPQTEE39 pKa = 3.78FSDD42 pKa = 4.63AEE44 pKa = 4.13LKK46 pKa = 9.29KK47 pKa = 9.02TLKK50 pKa = 9.79FWEE53 pKa = 4.48VTAMDD58 pKa = 5.04DD59 pKa = 3.87ATMVTQWSGVQSALAGGTFSAQNLKK84 pKa = 9.77EE85 pKa = 3.98LCQLAFNLRR94 pKa = 11.84KK95 pKa = 8.87PHH97 pKa = 6.15EE98 pKa = 4.77PGHH101 pKa = 5.53VFIHH105 pKa = 6.76NIPDD109 pKa = 2.81SWKK112 pKa = 10.42AYY114 pKa = 10.62LEE116 pKa = 4.19AATPDD121 pKa = 3.46GTAIPATEE129 pKa = 4.38NEE131 pKa = 4.52STMSTIGAAAATGSADD147 pKa = 3.07EE148 pKa = 4.21TAPNKK153 pKa = 9.95AAAIAFLSCTLMRR166 pKa = 11.84LAIKK170 pKa = 9.68EE171 pKa = 4.39PKK173 pKa = 10.03HH174 pKa = 8.42IMDD177 pKa = 4.06AMTNIRR183 pKa = 11.84SRR185 pKa = 11.84YY186 pKa = 7.21GSLYY190 pKa = 9.97GRR192 pKa = 11.84SSPFLNSVTFNLSQLSRR209 pKa = 11.84IKK211 pKa = 10.57QGLEE215 pKa = 3.73TYY217 pKa = 10.45AVARR221 pKa = 11.84GTLFYY226 pKa = 9.17YY227 pKa = 9.91TRR229 pKa = 11.84HH230 pKa = 6.24ADD232 pKa = 3.05STYY235 pKa = 9.93TYY237 pKa = 7.52TTPSYY242 pKa = 10.34GICRR246 pKa = 11.84YY247 pKa = 10.24LLFQHH252 pKa = 6.92LEE254 pKa = 4.07LEE256 pKa = 4.52GMHH259 pKa = 6.77IYY261 pKa = 11.03KK262 pKa = 9.46MLLALQTEE270 pKa = 4.93WATVPMRR277 pKa = 11.84LLLTWIRR284 pKa = 11.84NPRR287 pKa = 11.84SKK289 pKa = 10.7LAVLEE294 pKa = 3.97IVKK297 pKa = 10.25ILTNWDD303 pKa = 3.3KK304 pKa = 12.01ANVDD308 pKa = 4.02KK309 pKa = 10.95GWKK312 pKa = 8.36YY313 pKa = 11.18ARR315 pKa = 11.84LVNNTFFLNLSSRR328 pKa = 11.84RR329 pKa = 11.84NTYY332 pKa = 10.31LCAVLAALNKK342 pKa = 10.06KK343 pKa = 9.01FVPQGTGDD351 pKa = 3.54YY352 pKa = 11.05ANPNNIAVIKK362 pKa = 11.03NMDD365 pKa = 3.86SAVKK369 pKa = 10.1KK370 pKa = 10.17QVSPDD375 pKa = 3.37VQIVEE380 pKa = 4.8RR381 pKa = 11.84IYY383 pKa = 10.78DD384 pKa = 3.45IFLASSGSDD393 pKa = 3.3DD394 pKa = 4.21AGTAFTLSRR403 pKa = 11.84GVKK406 pKa = 8.58RR407 pKa = 11.84TSPNNPEE414 pKa = 4.24TRR416 pKa = 11.84MQWTPTQEE424 pKa = 4.12LEE426 pKa = 4.49RR427 pKa = 11.84DD428 pKa = 3.59LEE430 pKa = 4.25NPRR433 pKa = 11.84LRR435 pKa = 11.84RR436 pKa = 11.84GSRR439 pKa = 11.84IRR441 pKa = 11.84EE442 pKa = 4.09VNCRR446 pKa = 11.84PEE448 pKa = 4.5SDD450 pKa = 3.09MSQMQRR456 pKa = 11.84EE457 pKa = 4.57LVFHH461 pKa = 6.58EE462 pKa = 4.57SVSVSILCDD471 pKa = 3.3EE472 pKa = 4.59GRR474 pKa = 11.84VMSDD478 pKa = 3.7PITRR482 pKa = 11.84VSSIKK487 pKa = 10.75CGVLLLL493 pKa = 4.39

Molecular weight: 55.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

3798

233

1926

633.0

70.98

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.319 ± 0.634

1.606 ± 0.201

5.608 ± 0.56

6.135 ± 0.203

3.107 ± 0.264

6.214 ± 0.454

2.396 ± 0.268

7.399 ± 0.467

5.292 ± 0.237

9.9 ± 0.468

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.975 ± 0.449

3.923 ± 0.344

4.371 ± 0.469

2.87 ± 0.249

5.687 ± 0.69

8.557 ± 0.735

6.477 ± 0.756

6.214 ± 0.282

1.711 ± 0.283

3.239 ± 0.245
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski